miRNA display CGI


Results 1 - 20 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 49579 0.66 0.798128
Target:  5'- uCUCgGCCGACGgCGGCgccuGGgCGCaGCGGg -3'
miRNA:   3'- -GAG-CGGUUGCaGCUG----UCgGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 13870 0.66 0.798128
Target:  5'- -cUGCUAGCGgacgCGGCA-CUGCCGCuGGu -3'
miRNA:   3'- gaGCGGUUGCa---GCUGUcGGCGGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 42606 0.66 0.798128
Target:  5'- -gUGaCAGgGaCGGC-GCCGCCGCGGa -3'
miRNA:   3'- gaGCgGUUgCaGCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 101937 0.66 0.798128
Target:  5'- aUCGCCAucacguagucCGUC-AUGGCCGCgagcuCGCGGg -3'
miRNA:   3'- gAGCGGUu---------GCAGcUGUCGGCG-----GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 28013 0.66 0.798128
Target:  5'- --gGCCGAagcggcCGUC-AUAGCCGCCGCc- -3'
miRNA:   3'- gagCGGUU------GCAGcUGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 29156 0.66 0.798128
Target:  5'- gUCGCCugccgcgaGGCGcuggaGGCGGcCCGCCGCGn -3'
miRNA:   3'- gAGCGG--------UUGCag---CUGUC-GGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 73761 0.66 0.798128
Target:  5'- -gCGCCgGGCGgCGGCgcgGGCCGCuacgagCGCGGg -3'
miRNA:   3'- gaGCGG-UUGCaGCUG---UCGGCG------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 98137 0.66 0.798128
Target:  5'- -gCGUCAGC-UCGAgCGcGCCGCCGCc- -3'
miRNA:   3'- gaGCGGUUGcAGCU-GU-CGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 2983 0.66 0.798128
Target:  5'- -cCGCCGGgGcCGGCgcuggAGCCGCgCGCGc -3'
miRNA:   3'- gaGCGGUUgCaGCUG-----UCGGCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 36189 0.66 0.798128
Target:  5'- -aCGCCGugGcgCGugGGCuCGCUgaagauauaagGCGGg -3'
miRNA:   3'- gaGCGGUugCa-GCugUCG-GCGG-----------CGCC- -5'
6368 3' -59.3 NC_001847.1 + 38488 0.66 0.798128
Target:  5'- cCUCGagGACGUCGccggggggcggcGCGGUCGCCgGCGc -3'
miRNA:   3'- -GAGCggUUGCAGC------------UGUCGGCGG-CGCc -5'
6368 3' -59.3 NC_001847.1 + 129048 0.66 0.798128
Target:  5'- cCUCGCgGGCGUCu-CGcGCCuCCGCGa -3'
miRNA:   3'- -GAGCGgUUGCAGcuGU-CGGcGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 52098 0.66 0.798128
Target:  5'- -gCGCC-GCGgcccaagCGcACuAGCgGCCGCGGg -3'
miRNA:   3'- gaGCGGuUGCa------GC-UG-UCGgCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 75758 0.66 0.798128
Target:  5'- -cCGCCGGCuccguauuuuuuGcCGGCcGCCGCCGCu- -3'
miRNA:   3'- gaGCGGUUG------------CaGCUGuCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 101319 0.66 0.798128
Target:  5'- -gCGCCcGCGUCugcgcACAGCCGCUccaGCGc -3'
miRNA:   3'- gaGCGGuUGCAGc----UGUCGGCGG---CGCc -5'
6368 3' -59.3 NC_001847.1 + 103007 0.66 0.798128
Target:  5'- -gCGCgGGCG-CGGCGGCgcccagCGCCgGCGGc -3'
miRNA:   3'- gaGCGgUUGCaGCUGUCG------GCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 113776 0.66 0.798128
Target:  5'- -cCGcCCGAgG-CGGCccgAGCCGCCGaCGGc -3'
miRNA:   3'- gaGC-GGUUgCaGCUG---UCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 127472 0.66 0.798128
Target:  5'- gUCgGCCAuuacaAUGUUGcuuuCGGCCGCCauGCGGa -3'
miRNA:   3'- gAG-CGGU-----UGCAGCu---GUCGGCGG--CGCC- -5'
6368 3' -59.3 NC_001847.1 + 129657 0.66 0.798128
Target:  5'- --gGUCGAgGUugCGGCGGCCGCUGCc- -3'
miRNA:   3'- gagCGGUUgCA--GCUGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 92478 0.66 0.798128
Target:  5'- aUgGCCAGCG-CGGCGGCgGCCu--- -3'
miRNA:   3'- gAgCGGUUGCaGCUGUCGgCGGcgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.