miRNA display CGI


Results 1 - 20 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 3' -54.5 NC_001847.1 + 81241 0.66 0.948264
Target:  5'- cCGG-GCGgGGcCGUCGCGAGGAc-- -3'
miRNA:   3'- cGUCgCGUgCUuGCAGCGCUCCUuga -5'
6369 3' -54.5 NC_001847.1 + 104241 0.66 0.948264
Target:  5'- cGCGGUGCGCGGGCccaggCGCGuGGc--- -3'
miRNA:   3'- -CGUCGCGUGCUUGca---GCGCuCCuuga -5'
6369 3' -54.5 NC_001847.1 + 88874 0.66 0.948264
Target:  5'- cGguGCGCGCGGcggcggcgGCGgcuccCGCcGGGGGCg -3'
miRNA:   3'- -CguCGCGUGCU--------UGCa----GCGcUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 30198 0.66 0.948264
Target:  5'- cGCGGUGCGCGGcGCG-CGCGccGAAg- -3'
miRNA:   3'- -CGUCGCGUGCU-UGCaGCGCucCUUga -5'
6369 3' -54.5 NC_001847.1 + 80646 0.66 0.948264
Target:  5'- gGCGGCGCucGCGGGagaccCGgCGCcGGGGAGCc -3'
miRNA:   3'- -CGUCGCG--UGCUU-----GCaGCG-CUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 34788 0.66 0.948264
Target:  5'- cGCGGCGCGCGGcuACGaccCGCGGccgcuGGcGCg -3'
miRNA:   3'- -CGUCGCGUGCU--UGCa--GCGCU-----CCuUGa -5'
6369 3' -54.5 NC_001847.1 + 33502 0.66 0.948264
Target:  5'- gGCGGCGCgggcggcgGCGGGCGcCGCcgcgGAGGcGCc -3'
miRNA:   3'- -CGUCGCG--------UGCUUGCaGCG----CUCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 29707 0.66 0.948264
Target:  5'- cGCuuGgGCGCGAgacuGCGgCGCG-GGAGCg -3'
miRNA:   3'- -CGu-CgCGUGCU----UGCaGCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 119262 0.66 0.948264
Target:  5'- gGCGGCGCcCGcGCGgcUCGuCGAGGGcCa -3'
miRNA:   3'- -CGUCGCGuGCuUGC--AGC-GCUCCUuGa -5'
6369 3' -54.5 NC_001847.1 + 84667 0.66 0.948264
Target:  5'- uGUAGCGCGCcgcuuGCuGUCGCGcGGcGCUc -3'
miRNA:   3'- -CGUCGCGUGcu---UG-CAGCGCuCCuUGA- -5'
6369 3' -54.5 NC_001847.1 + 7699 0.66 0.948264
Target:  5'- uGCGGUGCugGAGCG-CGCcuuGGGc-- -3'
miRNA:   3'- -CGUCGCGugCUUGCaGCGcu-CCUuga -5'
6369 3' -54.5 NC_001847.1 + 99470 0.66 0.948264
Target:  5'- aGCAGCGCcgcuuGCGucacGACGUCGgccgcCGAGGcGGCg -3'
miRNA:   3'- -CGUCGCG-----UGC----UUGCAGC-----GCUCC-UUGa -5'
6369 3' -54.5 NC_001847.1 + 99019 0.66 0.948264
Target:  5'- cGCGGCGCGCGcGGCuUCGUGgaAGGcGCc -3'
miRNA:   3'- -CGUCGCGUGC-UUGcAGCGC--UCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 43443 0.66 0.948264
Target:  5'- cGCGGUGCcCGAgaGCGaaGCG-GGAGCc -3'
miRNA:   3'- -CGUCGCGuGCU--UGCagCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 1428 0.66 0.948264
Target:  5'- cGCGGUGCGCGGGCccaggCGCGuGGc--- -3'
miRNA:   3'- -CGUCGCGUGCUUGca---GCGCuCCuuga -5'
6369 3' -54.5 NC_001847.1 + 95760 0.66 0.948264
Target:  5'- cCGGCGC-CGGcuccccgacgGCGUCGC--GGAGCUg -3'
miRNA:   3'- cGUCGCGuGCU----------UGCAGCGcuCCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 54727 0.66 0.948264
Target:  5'- --uGCGCGUGAGCGUCuaCGGGGAcguGCUg -3'
miRNA:   3'- cguCGCGUGCUUGCAGc-GCUCCU---UGA- -5'
6369 3' -54.5 NC_001847.1 + 12646 0.66 0.947831
Target:  5'- uGCGGCuGCgggggagAgGAGCGUgGUGgAGGAGCUg -3'
miRNA:   3'- -CGUCG-CG-------UgCUUGCAgCGC-UCCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 32765 0.66 0.94696
Target:  5'- gGCGGCGCuucGCGAcggccggccgcuggACG-CGCGAGuccGAGCg -3'
miRNA:   3'- -CGUCGCG---UGCU--------------UGCaGCGCUC---CUUGa -5'
6369 3' -54.5 NC_001847.1 + 62907 0.66 0.945634
Target:  5'- gGUGGCGCgggugcucggggcccGCGGGCGgcuccUCGuCGGGGGGCa -3'
miRNA:   3'- -CGUCGCG---------------UGCUUGC-----AGC-GCUCCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.