miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 135140 0.66 0.689054
Target:  5'- gGGGCCCgC-GCGGCGC-GGCGCGg-- -3'
miRNA:   3'- aCUCGGG-GuCGCUGCGgUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 135018 0.68 0.569533
Target:  5'- cGAGgCCCgcgGGCGGgGCCGGgGCG-CGg -3'
miRNA:   3'- aCUCgGGG---UCGCUgCGGUCgUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 134893 0.76 0.204265
Target:  5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3'
miRNA:   3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 134836 0.67 0.628266
Target:  5'- cGaAGCUCCGGCGgggcgcggggacgGCGCCcGCGCGggcUCGg -3'
miRNA:   3'- aC-UCGGGGUCGC-------------UGCGGuCGUGC---AGC- -5'
6369 5' -60.7 NC_001847.1 + 134742 0.66 0.696941
Target:  5'- cGGGCCCUcggucucggucggAGCGcgguccgGCGCgCGGCGCG-CGg -3'
miRNA:   3'- aCUCGGGG-------------UCGC-------UGCG-GUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 134265 0.71 0.370847
Target:  5'- -cGGCCCCGGCGcgggcCGCCGccGCGCGUgGa -3'
miRNA:   3'- acUCGGGGUCGCu----GCGGU--CGUGCAgC- -5'
6369 5' -60.7 NC_001847.1 + 134218 0.67 0.629267
Target:  5'- cGGGCUCgGGCuucccGGCGCCGGCGgG-CGg -3'
miRNA:   3'- aCUCGGGgUCG-----CUGCGGUCGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 134176 0.68 0.530463
Target:  5'- -aAGCCCCGcCGGCccggguGCCGGCGCaGUCGu -3'
miRNA:   3'- acUCGGGGUcGCUG------CGGUCGUG-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 134095 0.66 0.689054
Target:  5'- aGGGCCCgCGGgaGACGCUcgugcugcugcGGCGCGcCGc -3'
miRNA:   3'- aCUCGGG-GUCg-CUGCGG-----------UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 134036 0.67 0.639271
Target:  5'- gGAGgCCgCGGCGGCGCCGccCGCGgccgCGg -3'
miRNA:   3'- aCUCgGG-GUCGCUGCGGUc-GUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 133560 0.7 0.437857
Target:  5'- -uGGCCCgAGCGgcGCGCUGGCGCG-CGc -3'
miRNA:   3'- acUCGGGgUCGC--UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 133245 0.66 0.676178
Target:  5'- --uGCCCCGcaucguacauguucGUGAUGUUGGCGCGUCu -3'
miRNA:   3'- acuCGGGGU--------------CGCUGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 133064 0.68 0.583386
Target:  5'- cGGGCCCCgcggGGCGcucgccgccaccgcuGCGgCGGCGCGUgGc -3'
miRNA:   3'- aCUCGGGG----UCGC---------------UGCgGUCGUGCAgC- -5'
6369 5' -60.7 NC_001847.1 + 132996 0.7 0.429103
Target:  5'- cGAGCCCUGGCG-C-CCGGCGC-UCGc -3'
miRNA:   3'- aCUCGGGGUCGCuGcGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 132971 0.66 0.689054
Target:  5'- --cGCCCaGGCGGCGCgGGCGCuG-CGa -3'
miRNA:   3'- acuCGGGgUCGCUGCGgUCGUG-CaGC- -5'
6369 5' -60.7 NC_001847.1 + 132372 0.69 0.483094
Target:  5'- -aGGCCgCCGGCGgggGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGG-GGUCGC---UGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 132319 0.68 0.57942
Target:  5'- -cAGCCcgCCGGCGGaggUGCCGGCGCGgcuggCGg -3'
miRNA:   3'- acUCGG--GGUCGCU---GCGGUCGUGCa----GC- -5'
6369 5' -60.7 NC_001847.1 + 132174 0.79 0.124215
Target:  5'- -cGGCCCCGGCGGCGCU-GCGCGcCGa -3'
miRNA:   3'- acUCGGGGUCGCUGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 131921 0.71 0.370847
Target:  5'- -aAGCCgCGGCGGCGCggaGGCACGUgCGc -3'
miRNA:   3'- acUCGGgGUCGCUGCGg--UCGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 131904 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.