miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 133438 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 133184 0.7 0.504532
Target:  5'- cGGGCGCgggcugcccucgCUGGagGAgCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCG------------GACUagCUgGAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 131935 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 130685 0.66 0.733803
Target:  5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3'
miRNA:   3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 130518 0.67 0.70433
Target:  5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 127403 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 127310 0.69 0.543461
Target:  5'- cGGUGCCgGAgacacggCGACCg--GCGCCGAg -3'
miRNA:   3'- cUCGCGGaCUa------GCUGGagaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 126677 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 123061 0.66 0.747306
Target:  5'- cGGGCGCCgGAcccgcggcgcuccgCGGCCUCgGCGuCCGc -3'
miRNA:   3'- -CUCGCGGaCUa-------------GCUGGAGaCGC-GGCu -5'
6371 3' -59.1 NC_001847.1 + 122106 0.7 0.533627
Target:  5'- cAGCGCCucagUGggCGGCaugCUGCGCCGu -3'
miRNA:   3'- cUCGCGG----ACuaGCUGga-GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 121809 0.69 0.563298
Target:  5'- cGGGCGCCUGcUCG-CCgcccGUGCCGGa -3'
miRNA:   3'- -CUCGCGGACuAGCuGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 119864 0.67 0.714226
Target:  5'- cAGCGUCggGAUCGGCauugcggCUGCGgCGAu -3'
miRNA:   3'- cUCGCGGa-CUAGCUGga-----GACGCgGCU- -5'
6371 3' -59.1 NC_001847.1 + 118212 0.77 0.213188
Target:  5'- -cGCGCaCUGAgcagacCGGCgUCUGCGCCGAg -3'
miRNA:   3'- cuCGCG-GACUa-----GCUGgAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 117578 0.75 0.283749
Target:  5'- gGGGCGCgCUGccCGGCCaaaacgUCUGCGCCGGg -3'
miRNA:   3'- -CUCGCG-GACuaGCUGG------AGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 117297 0.75 0.258364
Target:  5'- -cGCGCCcGA-CGACCUCUGUuucGCCGAc -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGACG---CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 114976 0.66 0.762498
Target:  5'- -cGCGCCc-GUUG-CCUgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGacUAGCuGGAgaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 113510 0.66 0.762498
Target:  5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3'
miRNA:   3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 111425 1.08 0.001464
Target:  5'- aGAGCGCCUGAUCGACCUCUGCGCCGAc -3'
miRNA:   3'- -CUCGCGGACUAGCUGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 111359 0.67 0.70433
Target:  5'- -cGCG-CUGggCGACCUC-GCGCCc- -3'
miRNA:   3'- cuCGCgGACuaGCUGGAGaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 111262 0.69 0.563298
Target:  5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3'
miRNA:   3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.