miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 100332 0.66 0.955612
Target:  5'- cCGGUcGgCCUGCCGcgccagcGGCCGCGg -3'
miRNA:   3'- uGUCA-UgGGAUGGCuuuu---CCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 85974 0.66 0.955612
Target:  5'- aGCGGacGCCCggcgcgugACCGu---GGuCCGCGCg -3'
miRNA:   3'- -UGUCa-UGGGa-------UGGCuuuuCC-GGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 96973 0.66 0.955612
Target:  5'- cGCGGguacgGCCgCUuCCGGucccucGGGGCgGCGCg -3'
miRNA:   3'- -UGUCa----UGG-GAuGGCUu-----UUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 134260 0.66 0.955612
Target:  5'- cGCGGcgGCCCcgGCgCGGGccGccGCCGCGCg -3'
miRNA:   3'- -UGUCa-UGGGa-UG-GCUUuuC--CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 84630 0.66 0.955612
Target:  5'- aGCGGgGCCaUGCCGcgGcuGCUGCGCg -3'
miRNA:   3'- -UGUCaUGGgAUGGCuuUucCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 85475 0.66 0.955612
Target:  5'- aGCAGaacuacgGCCgUguacGCgGAGAAGGCCGCuGUg -3'
miRNA:   3'- -UGUCa------UGGgA----UGgCUUUUCCGGCG-CG- -5'
6372 3' -53.9 NC_001847.1 + 49369 0.66 0.955612
Target:  5'- cGCGGUggucGCCggcacuaagaCUACCGGccuGGGUgGCGCg -3'
miRNA:   3'- -UGUCA----UGG----------GAUGGCUuu-UCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 70638 0.66 0.955612
Target:  5'- gGCGcUGCgCggGCUGGAugacguGGCCGCGCa -3'
miRNA:   3'- -UGUcAUGgGa-UGGCUUuu----CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 15446 0.66 0.955612
Target:  5'- aGCug-GCgCUGCUGAAAAgcguGGCgGCGCa -3'
miRNA:   3'- -UGucaUGgGAUGGCUUUU----CCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 2336 0.66 0.955612
Target:  5'- cGCGGaACCC-GCCGuuuugcacGGGCCGCa- -3'
miRNA:   3'- -UGUCaUGGGaUGGCuuu-----UCCGGCGcg -5'
6372 3' -53.9 NC_001847.1 + 13538 0.66 0.955612
Target:  5'- gGCAGcaaCC-GCCGccGGGGCgGCGCg -3'
miRNA:   3'- -UGUCaugGGaUGGCuuUUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 31447 0.66 0.955612
Target:  5'- cGCGGcgGCCCcgGCgCGGGccGccGCCGCGCg -3'
miRNA:   3'- -UGUCa-UGGGa-UG-GCUUuuC--CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 88101 0.66 0.955612
Target:  5'- gGCGGUGgCgCggcugGCCGGAAucacGGuGUCGCGCg -3'
miRNA:   3'- -UGUCAUgG-Ga----UGGCUUU----UC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 131286 0.66 0.955612
Target:  5'- cGCAGc-CCCggcGCCGucuacgucuGGGGCgGCGCg -3'
miRNA:   3'- -UGUCauGGGa--UGGCuu-------UUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 2132 0.66 0.955612
Target:  5'- cCAGUGCgUCUACCaGGuuuGcGCUGCGCa -3'
miRNA:   3'- uGUCAUG-GGAUGG-CUuuuC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 128440 0.66 0.954822
Target:  5'- uACAGUgcgcucgGCCCUGCgCGcgcgcccGGccGGCCGcCGCg -3'
miRNA:   3'- -UGUCA-------UGGGAUG-GC-------UUuuCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 60736 0.66 0.951563
Target:  5'- uCGGcgGCCCgcgcGCgCGcGgcGGCCGCGCg -3'
miRNA:   3'- uGUCa-UGGGa---UG-GCuUuuCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 33943 0.66 0.951563
Target:  5'- uGCAG-GCCC-GCCGGagaaGAAGGacagaguuagaCCGCGCc -3'
miRNA:   3'- -UGUCaUGGGaUGGCU----UUUCC-----------GGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 40753 0.66 0.951563
Target:  5'- cGCGGUACUgcGCCGAAucguGcGCCGCa- -3'
miRNA:   3'- -UGUCAUGGgaUGGCUUuu--C-CGGCGcg -5'
6372 3' -53.9 NC_001847.1 + 108636 0.66 0.951563
Target:  5'- gGCGGgcgACgCUGCaGAAGuggccgGGGCCGCGg -3'
miRNA:   3'- -UGUCa--UGgGAUGgCUUU------UCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.