miRNA display CGI


Results 1 - 20 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 134892 0.7 0.419042
Target:  5'- uCGgGCCcCUGggCGCcGGGCGUCGGg -3'
miRNA:   3'- cGCgCGGuGGCgaGCGaCCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 134763 0.67 0.614916
Target:  5'- aGCGCGguCCGgCGCgcggCGCgcgGGGCGggcccCGGg -3'
miRNA:   3'- -CGCGC--GGUgGCGa---GCGa--CCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 134539 0.73 0.291136
Target:  5'- cGCGCGCCGCUGCggaGC--GGCcgCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGag-CGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 134379 0.68 0.555211
Target:  5'- -gGCGCCGCCGgcggcgggccggcCUCGCccuagggGGGCccgCGGg -3'
miRNA:   3'- cgCGCGGUGGC-------------GAGCGa------CCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 134113 0.67 0.605059
Target:  5'- uCGUGCUGCUGCggCGCgccgcGGGCggCGGc -3'
miRNA:   3'- cGCGCGGUGGCGa-GCGa----CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 134093 0.71 0.37016
Target:  5'- -gGCGCCGCCGCUUGCUcuGGCGa--- -3'
miRNA:   3'- cgCGCGGUGGCGAGCGAc-CCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 134018 0.76 0.186671
Target:  5'- -gGCGCCGCCGCUggUGCUGgaGGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA--GCGAC--CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 133896 0.68 0.536927
Target:  5'- nGCGCGCCGCUGCggcCGgUGuaccuGGCcugCGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCgAC-----CCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 133871 0.72 0.332506
Target:  5'- cCGCGCCGCCaacCGCUGGGgGcUCGGc -3'
miRNA:   3'- cGCGCGGUGGcgaGCGACCCgU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 133807 0.67 0.634661
Target:  5'- cCGCGCagGgCGCggCGCUGGGgcUCGGg -3'
miRNA:   3'- cGCGCGg-UgGCGa-GCGACCCguAGCC- -5'
6372 5' -61.3 NC_001847.1 + 133770 0.66 0.644534
Target:  5'- cGCGUGCUGCCGg-CGCUcgacGGGCGcaaGGa -3'
miRNA:   3'- -CGCGCGGUGGCgaGCGA----CCCGUag-CC- -5'
6372 5' -61.3 NC_001847.1 + 133665 0.67 0.634661
Target:  5'- -gGCGCCGCCGCUgCGgCUcuGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA-GC-GAccCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 133546 0.68 0.53597
Target:  5'- aGUGCGCCGCgCGCUggcccgagcggcgCGCUGGcGCG-CGc -3'
miRNA:   3'- -CGCGCGGUG-GCGA-------------GCGACC-CGUaGCc -5'
6372 5' -61.3 NC_001847.1 + 133231 0.7 0.451071
Target:  5'- cCGCGCCGCggcgggcucucgcaCGCgcucgcggCGCUGGGCAacCGGc -3'
miRNA:   3'- cGCGCGGUG--------------GCGa-------GCGACCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 133050 0.68 0.536927
Target:  5'- gGCcCGCCGCCGCgcgggcccCGCgGGGCGcUCGc -3'
miRNA:   3'- -CGcGCGGUGGCGa-------GCGaCCCGU-AGCc -5'
6372 5' -61.3 NC_001847.1 + 132780 0.67 0.624786
Target:  5'- aGC-CGCCGCCGCcgaCGCggccGGGCcggcgCGGc -3'
miRNA:   3'- -CGcGCGGUGGCGa--GCGa---CCCGua---GCC- -5'
6372 5' -61.3 NC_001847.1 + 132760 0.74 0.248096
Target:  5'- aGCGCGUCACCGCcgucuUCGC-GGGCGcgCGa -3'
miRNA:   3'- -CGCGCGGUGGCG-----AGCGaCCCGUa-GCc -5'
6372 5' -61.3 NC_001847.1 + 132712 0.66 0.664245
Target:  5'- gGCGgcccUGCCgGCCGC-CGCggGGGCcccUCGGg -3'
miRNA:   3'- -CGC----GCGG-UGGCGaGCGa-CCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 132682 0.7 0.418196
Target:  5'- gGCGcCGCCGCCcgcucgaucgggaGCUCGCUGcGGCuggCGc -3'
miRNA:   3'- -CGC-GCGGUGG-------------CGAGCGAC-CCGua-GCc -5'
6372 5' -61.3 NC_001847.1 + 132392 0.68 0.575624
Target:  5'- -gGCGCCggcGCCGCcgCGCcGGGC--CGGg -3'
miRNA:   3'- cgCGCGG---UGGCGa-GCGaCCCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.