miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 3157 0.66 0.899633
Target:  5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 52119 0.66 0.899633
Target:  5'- -aGCGGCc-GCGGGCCGgcgGCgccccAGCGg -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCa--CGau---UUGU- -5'
6373 3' -55.9 NC_001847.1 + 22163 0.66 0.899633
Target:  5'- -aGcCGGCGcaGCGGGCCGgccUGCUcGGGCGa -3'
miRNA:   3'- gaC-GCUGCa-CGCCCGGC---ACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 67672 0.66 0.899633
Target:  5'- aCUGCGACGacgccGCGGccGCCGcgcgcgcGCUGGACc -3'
miRNA:   3'- -GACGCUGCa----CGCC--CGGCa------CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 124976 0.66 0.899633
Target:  5'- -aGcCGGCGcaGCGGGCCGgccUGCUcGGGCGa -3'
miRNA:   3'- gaC-GCUGCa-CGCCCGGC---ACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 105970 0.66 0.899633
Target:  5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 10127 0.66 0.899633
Target:  5'- -cGCGGCGaGCGGGcCCG-GCcguAGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCC-GGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 86519 0.66 0.893022
Target:  5'- -cGCGGCG-GCuGGGCgcccgCGUGCUGgcGGCGc -3'
miRNA:   3'- gaCGCUGCaCG-CCCG-----GCACGAU--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 118992 0.66 0.893022
Target:  5'- -gGCGGCGUGCGacauGCUGgcGCUGAucGCAg -3'
miRNA:   3'- gaCGCUGCACGCc---CGGCa-CGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 14711 0.66 0.893022
Target:  5'- -cGCGACGcGCGGGCaGgagGC-GAACGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGgCa--CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 55500 0.66 0.886176
Target:  5'- -gGCGACGU--GGGCCcUGCUGcuGGCGg -3'
miRNA:   3'- gaCGCUGCAcgCCCGGcACGAU--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 57669 0.66 0.886176
Target:  5'- -gGCaGGCG-GUGGGCacggugGUGCUGGGCGc -3'
miRNA:   3'- gaCG-CUGCaCGCCCGg-----CACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125095 0.66 0.886176
Target:  5'- -cGCGcGCGUGUcGGCCGUGacGAACGc -3'
miRNA:   3'- gaCGC-UGCACGcCCGGCACgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22282 0.66 0.886176
Target:  5'- -cGCGcGCGUGUcGGCCGUGacGAACGc -3'
miRNA:   3'- gaCGC-UGCACGcCCGGCACgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 27859 0.66 0.886176
Target:  5'- gUGCGGgcCcUGUGGGCCGcGCUcGAGCGg -3'
miRNA:   3'- gACGCU--GcACGCCCGGCaCGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 62522 0.66 0.886176
Target:  5'- gUGCGGCacggGCGGcacguGCCGUGCggccAGCAg -3'
miRNA:   3'- gACGCUGca--CGCC-----CGGCACGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 19766 0.66 0.886176
Target:  5'- -gGCGGgGUGCGGGCuCG-GC---GCAg -3'
miRNA:   3'- gaCGCUgCACGCCCG-GCaCGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 25742 0.66 0.886176
Target:  5'- -aGCGGCG-GCGGGCgGcgGCg--GCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGgCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 31307 0.66 0.879101
Target:  5'- gCUGCGGCGcgccGCGGGCgGcgGCcuggugGAGCGc -3'
miRNA:   3'- -GACGCUGCa---CGCCCGgCa-CGa-----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14159 0.66 0.879101
Target:  5'- -aGCGGCGgccgGgGcGGCCGcGCUAAagGCAc -3'
miRNA:   3'- gaCGCUGCa---CgC-CCGGCaCGAUU--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.