miRNA display CGI


Results 1 - 20 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 89654 0.66 0.673052
Target:  5'- uGUACGCCcaucuuguuCCCgagcacgcgcgacugGCGCGCGCUauuugCGcGCg -3'
miRNA:   3'- uCAUGCGGu--------GGGa--------------CGCGCGCGA-----GC-CG- -5'
6374 3' -61.3 NC_001847.1 + 88961 0.66 0.672063
Target:  5'- cGgcCGCUACCgCgUGCGCGUGgUuuaCGGCg -3'
miRNA:   3'- uCauGCGGUGG-G-ACGCGCGCgA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 23866 0.66 0.672063
Target:  5'- --aGCGCCGCCCccggcccgGCGC-CGCcuccgaccCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-------CGCGcGCGa-------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 1655 0.66 0.672063
Target:  5'- cGUGCGCCuGCCCgacggccggGC-CGuCGCgCGGCc -3'
miRNA:   3'- uCAUGCGG-UGGGa--------CGcGC-GCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 66943 0.66 0.672063
Target:  5'- cGUGCGCC-CCCuacUGUGCGgGCUuuuUGaGCc -3'
miRNA:   3'- uCAUGCGGuGGG---ACGCGCgCGA---GC-CG- -5'
6374 3' -61.3 NC_001847.1 + 38111 0.66 0.672063
Target:  5'- --gACGCCgcuGCCCgGCGgGUGCgccgGGCa -3'
miRNA:   3'- ucaUGCGG---UGGGaCGCgCGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 27899 0.66 0.672063
Target:  5'- aGGU-CGCCgGCCCgGC-CGCGCUUgcggaGGCc -3'
miRNA:   3'- -UCAuGCGG-UGGGaCGcGCGCGAG-----CCG- -5'
6374 3' -61.3 NC_001847.1 + 86603 0.66 0.672063
Target:  5'- -uUACGCgGCuCCggGCGCGC-CUCgaGGCg -3'
miRNA:   3'- ucAUGCGgUG-GGa-CGCGCGcGAG--CCG- -5'
6374 3' -61.3 NC_001847.1 + 43321 0.66 0.672063
Target:  5'- --cGCGCUGCCgUGCugccaucgcCGCGCggCGGCg -3'
miRNA:   3'- ucaUGCGGUGGgACGc--------GCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 41993 0.66 0.672063
Target:  5'- cGgcCGCCuuuCCCgcgGgGgGCGC-CGGCa -3'
miRNA:   3'- uCauGCGGu--GGGa--CgCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 58846 0.66 0.672063
Target:  5'- cGGUGCccGCgGCgCUGCGUccGCGCgccaGGCa -3'
miRNA:   3'- -UCAUG--CGgUGgGACGCG--CGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 61965 0.66 0.672063
Target:  5'- --cGCGCCguGCCCgccgGCGCG-GCg-GGCa -3'
miRNA:   3'- ucaUGCGG--UGGGa---CGCGCgCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 65689 0.66 0.672063
Target:  5'- ---cCGCCGCCgCcGCGCGCGCgccGCc -3'
miRNA:   3'- ucauGCGGUGG-GaCGCGCGCGagcCG- -5'
6374 3' -61.3 NC_001847.1 + 46499 0.66 0.672063
Target:  5'- --aGCGUgGCCgaGCGUugccagcggcaGCGCUCGGg -3'
miRNA:   3'- ucaUGCGgUGGgaCGCG-----------CGCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 130853 0.66 0.672063
Target:  5'- gAGUACcaaGgCGCCg-GCGCGCGCcucgUGGCc -3'
miRNA:   3'- -UCAUG---CgGUGGgaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 109822 0.66 0.672063
Target:  5'- cGGga-GCCGgCCuuUGgGCGCGCccucgUCGGCg -3'
miRNA:   3'- -UCaugCGGUgGG--ACgCGCGCG-----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 97792 0.66 0.672063
Target:  5'- --cGCGCCAgcUCCgcacgGuCGCGCGCgUGGCc -3'
miRNA:   3'- ucaUGCGGU--GGGa----C-GCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 95635 0.66 0.672063
Target:  5'- uGGcGgGCCGCUCUG-GCGCGgggggCGGCg -3'
miRNA:   3'- -UCaUgCGGUGGGACgCGCGCga---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 67680 0.66 0.672063
Target:  5'- --gACGCCGCggCCgccgcGCGCGCGCU-GGa -3'
miRNA:   3'- ucaUGCGGUG--GGa----CGCGCGCGAgCCg -5'
6374 3' -61.3 NC_001847.1 + 9160 0.66 0.672063
Target:  5'- uGGU-CGCCgugGCCCUGUaCGCGUaCGGg -3'
miRNA:   3'- -UCAuGCGG---UGGGACGcGCGCGaGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.