miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 134529 0.68 0.680692
Target:  5'- -aGgCGCGGGcCGCgcGCCGCuGCGGa -3'
miRNA:   3'- agCgGCGCUCaGUGaaCGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134235 0.69 0.609796
Target:  5'- gCGCCgGCGGGcgGCggccggcgGCCGCGGCGGc -3'
miRNA:   3'- aGCGG-CGCUCagUGaa------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134128 0.66 0.756307
Target:  5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3'
miRNA:   3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134049 0.66 0.786085
Target:  5'- aCGCgGCgucuccaGAGUCACagGCggggaGCAGCGAa -3'
miRNA:   3'- aGCGgCG-------CUCAGUGaaCGg----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134022 0.75 0.315176
Target:  5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133950 0.68 0.69073
Target:  5'- gCGcCCGaCGAGcUGCcgGCCGCGGCGGu -3'
miRNA:   3'- aGC-GGC-GCUCaGUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133672 0.7 0.529837
Target:  5'- cCGCUGCGGcUC---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUcAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133523 0.72 0.409744
Target:  5'- gCGCCGCG-GU-GC-UGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCAgUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 133209 0.7 0.569472
Target:  5'- gCGCCGgcggccCGAGUgGCcgccgcGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC------GCUCAgUGaa----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 132547 0.78 0.200783
Target:  5'- gCGCgGCGGGcUCGCgugcgGCCGCGGCGGc -3'
miRNA:   3'- aGCGgCGCUC-AGUGaa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 132289 0.71 0.500786
Target:  5'- aCGcCCGCGAGUCGCa-GCgGCAugGCGGa -3'
miRNA:   3'- aGC-GGCGCUCAGUGaaCGgCGU--CGCU- -5'
6375 3' -58.5 NC_001847.1 + 132012 0.71 0.510396
Target:  5'- gCGCCGcCGGGcUCccgguGCUcucgGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC-GCUC-AG-----UGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 131959 0.71 0.481814
Target:  5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3'
miRNA:   3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5'
6375 3' -58.5 NC_001847.1 + 131906 0.66 0.777839
Target:  5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3'
miRNA:   3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 131905 0.68 0.640235
Target:  5'- cUCGCUGCu-GUacCGCaaGCCGCGGCGGc -3'
miRNA:   3'- -AGCGGCGcuCA--GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 131700 0.69 0.589573
Target:  5'- gCGCUGUGGG-CGC-UGCCGCacguGGCGGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 131608 0.67 0.740019
Target:  5'- cCGCCGCGc-UCGCg-GCCGUAGuCGGc -3'
miRNA:   3'- aGCGGCGCucAGUGaaCGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 131528 0.66 0.768554
Target:  5'- gCGCCGCGAcGcCAUggccugGCUGCAgagcGCGAa -3'
miRNA:   3'- aGCGGCGCU-CaGUGaa----CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 131446 0.67 0.720518
Target:  5'- aUUGCCGCGccuaccuguGGUgCGCgcagGCuCGCGGCGGc -3'
miRNA:   3'- -AGCGGCGC---------UCA-GUGaa--CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 131199 0.7 0.53966
Target:  5'- gCGCUGUGGGUCGCgcucGCCGCccgcugccAGCGc -3'
miRNA:   3'- aGCGGCGCUCAGUGaa--CGGCG--------UCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.