miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 74124 0.67 0.898647
Target:  5'- cGCCcGGgga-UGUG-ACGCGCGGCGCc -3'
miRNA:   3'- -UGGaCCagaaGCACaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 19616 0.67 0.92305
Target:  5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3'
miRNA:   3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 117704 0.67 0.92305
Target:  5'- cACCgaGGg---CGUGUACACuuGGCGCc -3'
miRNA:   3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5'
6376 3' -54 NC_001847.1 + 27422 0.67 0.91732
Target:  5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3'
miRNA:   3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 74482 0.67 0.911341
Target:  5'- -gCUGGg---CGUGUugAUGCAGCaGCc -3'
miRNA:   3'- ugGACCagaaGCACAugUGCGUCG-CG- -5'
6376 3' -54 NC_001847.1 + 28691 0.67 0.911341
Target:  5'- gGCgCUGGUggacCUg-GUGUACGCGCGcCGCg -3'
miRNA:   3'- -UG-GACCA----GAagCACAUGUGCGUcGCG- -5'
6376 3' -54 NC_001847.1 + 78858 0.67 0.905116
Target:  5'- -gCUGGUgUgcUCGcgGUGCGCGCccucGCGCa -3'
miRNA:   3'- ugGACCAgA--AGCa-CAUGUGCGu---CGCG- -5'
6376 3' -54 NC_001847.1 + 46203 0.67 0.905116
Target:  5'- ---aGGUCggCGUGUccguCGCGCAugGCGCa -3'
miRNA:   3'- uggaCCAGaaGCACAu---GUGCGU--CGCG- -5'
6376 3' -54 NC_001847.1 + 85211 0.67 0.898647
Target:  5'- cGCCacgGcGUCcaaCGUGcgcACGCGCAGCGCc -3'
miRNA:   3'- -UGGa--C-CAGaa-GCACa--UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 78541 0.67 0.92305
Target:  5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3'
miRNA:   3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 42061 0.67 0.928531
Target:  5'- uGCCUGGggCUg---GUGcCGCuGCGGCGCa -3'
miRNA:   3'- -UGGACCa-GAagcaCAU-GUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 55377 0.66 0.933763
Target:  5'- gACCUGGUUUcUG-GUGCcgcugaucGCGCuGGCGCu -3'
miRNA:   3'- -UGGACCAGAaGCaCAUG--------UGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 16289 0.66 0.95222
Target:  5'- cGCCggcgGGUCgaCGUaUACcgucaccCGCGGCGCg -3'
miRNA:   3'- -UGGa---CCAGaaGCAcAUGu------GCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 97801 0.66 0.95222
Target:  5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3'
miRNA:   3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 76504 0.66 0.947973
Target:  5'- gACCcGGcggaaaUCUUCGUGgcccagaugAUGCgGCAGCGCu -3'
miRNA:   3'- -UGGaCC------AGAAGCACa--------UGUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 22602 0.66 0.943942
Target:  5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3'
miRNA:   3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 101829 0.66 0.943482
Target:  5'- gGCC--GUCUUCgGUGUGCGcCGUuGCGCc -3'
miRNA:   3'- -UGGacCAGAAG-CACAUGU-GCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 93664 0.66 0.943482
Target:  5'- aGCUg---CUUCGUGcGCAUGCcGCGCg -3'
miRNA:   3'- -UGGaccaGAAGCACaUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 54372 0.66 0.938746
Target:  5'- gGCCgGGUCguccCG-GUcCGCGCcGGCGCg -3'
miRNA:   3'- -UGGaCCAGaa--GCaCAuGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 41720 0.66 0.933763
Target:  5'- gGCCaGGg---CGUGUACAgCGCcguGCGCu -3'
miRNA:   3'- -UGGaCCagaaGCACAUGU-GCGu--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.