miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 135011 0.67 0.56999
Target:  5'- cGGGGCc--CGagGCCCGCGggcggGGCCGg -3'
miRNA:   3'- cUCCCGaaaGCg-CGGGUGCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 134847 0.67 0.577926
Target:  5'- cGGGGCgcggggacgGCGCCCGCGcgGGCuCGg -3'
miRNA:   3'- cUCCCGaaag-----CGCGGGUGCa-CCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 134224 0.67 0.579914
Target:  5'- -cGGGCUUcccgGCGCCgGCGggcggcGGCCGg -3'
miRNA:   3'- cuCCCGAAag--CGCGGgUGCa-----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 133887 0.69 0.492588
Target:  5'- uGGGGGCUcggCGCGCCgcUGcGGCCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 133616 0.67 0.599862
Target:  5'- -cGGGCgccUUCGCGCgCGCcgaGGCCGc -3'
miRNA:   3'- cuCCCGa--AAGCGCGgGUGca-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 133073 0.68 0.51058
Target:  5'- cGGGGCgcUCGcCGCCaccgcugcggcggCGCGUGGCCu- -3'
miRNA:   3'- cUCCCGaaAGC-GCGG-------------GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 132553 0.67 0.579914
Target:  5'- -cGGGCUcgCGUGCggCCGCGgcGGCCGc -3'
miRNA:   3'- cuCCCGAaaGCGCG--GGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 132382 0.66 0.629938
Target:  5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 131764 0.67 0.569
Target:  5'- gGAGGGCUUUgCGCGgCUcggcgcgcggauuGCGgcGGCCGg -3'
miRNA:   3'- -CUCCCGAAA-GCGCgGG-------------UGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 131231 0.66 0.62793
Target:  5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3'
miRNA:   3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 131144 0.67 0.579914
Target:  5'- -cGGGCccggCGC-CCCGCGgGGCCGc -3'
miRNA:   3'- cuCCCGaaa-GCGcGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 130940 0.68 0.540497
Target:  5'- cAGGGCUUUgGCuGCCUGCGcgcGGCCc- -3'
miRNA:   3'- cUCCCGAAAgCG-CGGGUGCa--CCGGca -5'
6376 5' -60.9 NC_001847.1 + 130867 0.69 0.464794
Target:  5'- --cGGCg--CGCGCCU-CGUGGCCGc -3'
miRNA:   3'- cucCCGaaaGCGCGGGuGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 130509 0.68 0.521121
Target:  5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3'
miRNA:   3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 130220 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 128817 0.66 0.639976
Target:  5'- cGGGGCaccCGCGU--ACGUGGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCGggUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 128077 0.67 0.579914
Target:  5'- cGGGcGGCUcgccgCGUGCCUugGUGGCg-- -3'
miRNA:   3'- -CUC-CCGAaa---GCGCGGGugCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 128032 0.68 0.550277
Target:  5'- gGAGGaGCccggccgUgGCGCCUACGUGGUCu- -3'
miRNA:   3'- -CUCC-CGaa-----AgCGCGGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 128002 0.68 0.520159
Target:  5'- -cGGGUUUUCGCugaugcuGCUCACG-GGCCa- -3'
miRNA:   3'- cuCCCGAAAGCG-------CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 127031 0.66 0.619901
Target:  5'- uGGGGCcc-CGCGCCUGCGcUGGCg-- -3'
miRNA:   3'- cUCCCGaaaGCGCGGGUGC-ACCGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.