miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 68943 0.65 0.955458
Target:  5'- -cGCGgGCuGCGCCUCcagccaggcgUCCAGCg- -3'
miRNA:   3'- gaCGCgCG-CGUGGAGuaa-------AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 18527 0.66 0.952187
Target:  5'- gCUGCGgGCGCGCCgccg-UCCGcgccGCa- -3'
miRNA:   3'- -GACGCgCGCGUGGaguaaAGGU----UGag -5'
6377 5' -53.5 NC_001847.1 + 43722 0.66 0.952187
Target:  5'- gCUGCGCGCggacguggugGCGCaCUCug--CCAACa- -3'
miRNA:   3'- -GACGCGCG----------CGUG-GAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 65659 0.66 0.952187
Target:  5'- -cGCGUGCGCGCCcgcacCAUcgCgCAGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGa----GUAaaG-GUUGAg -5'
6377 5' -53.5 NC_001847.1 + 78449 0.66 0.952187
Target:  5'- gCUGgGCuGCcuGCACCUCGUgcgcaCgGACUCg -3'
miRNA:   3'- -GACgCG-CG--CGUGGAGUAaa---GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 106704 0.66 0.952187
Target:  5'- -cGCGCG-GCGCCgcggCGUagCCAGCg- -3'
miRNA:   3'- gaCGCGCgCGUGGa---GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 70132 0.66 0.952187
Target:  5'- aUGCGCauGCGCGCCa----UCCAgcaGCUCg -3'
miRNA:   3'- gACGCG--CGCGUGGaguaaAGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 73583 0.66 0.952187
Target:  5'- uCUGCaccuCGCGCACCgugcCGUUgCCGgcgGCUCg -3'
miRNA:   3'- -GACGc---GCGCGUGGa---GUAAaGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 118108 0.66 0.952187
Target:  5'- gCUGCGCGUGUACUUCGagggCGGCg- -3'
miRNA:   3'- -GACGCGCGCGUGGAGUaaagGUUGag -5'
6377 5' -53.5 NC_001847.1 + 3891 0.66 0.952187
Target:  5'- -cGCGCG-GCGCCgcggCGUagCCAGCg- -3'
miRNA:   3'- gaCGCGCgCGUGGa---GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 16093 0.66 0.952187
Target:  5'- -cGCGCGCGUGCCggCGUaccgcUUCCcACa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUA-----AAGGuUGag -5'
6377 5' -53.5 NC_001847.1 + 46447 0.66 0.952187
Target:  5'- uCUGCGCGCGCAgCgccg--CCAgggcACUUa -3'
miRNA:   3'- -GACGCGCGCGUgGaguaaaGGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 102769 0.66 0.952187
Target:  5'- -cGUGCGCGCGCCguucugCAccaaaaggCCAGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 122703 0.66 0.952187
Target:  5'- -cGCGCGCGCugugccggcGCCUUGgagcCCGcACUCa -3'
miRNA:   3'- gaCGCGCGCG---------UGGAGUaaa-GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 1165 0.66 0.951767
Target:  5'- -cGCGCGCGCucccagccccggcGCCUUAUcUCgcuaUAGCUCc -3'
miRNA:   3'- gaCGCGCGCG-------------UGGAGUAaAG----GUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 62628 0.66 0.947877
Target:  5'- -cGCGCGCGCGCgaauggggcguaCUCGgcgagcCCGGCUa -3'
miRNA:   3'- gaCGCGCGCGUG------------GAGUaaa---GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 103594 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 781 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 20986 0.66 0.947877
Target:  5'- gUGaGCGCGCGCCgcugCAUgcuggugCgAACUCa -3'
miRNA:   3'- gACgCGCGCGUGGa---GUAaa-----GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 51209 0.66 0.947877
Target:  5'- --cCGCGCGCACUUCGagcgggCCcuGCUCg -3'
miRNA:   3'- gacGCGCGCGUGGAGUaaa---GGu-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.