Results 1 - 20 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 107514 | 1.11 | 0.00186 |
Target: 5'- cGCGAGUGCCGAGCGGACGAGGAACGAu -3' miRNA: 3'- -CGCUCACGGCUCGCCUGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 125464 | 0.79 | 0.226208 |
Target: 5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3' miRNA: 3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 22651 | 0.79 | 0.226208 |
Target: 5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3' miRNA: 3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 42729 | 0.79 | 0.231724 |
Target: 5'- gGCGGGcgGCCGcGCGGGCGGcGGGGCGGa -3' miRNA: 3'- -CGCUCa-CGGCuCGCCUGCU-CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 131007 | 0.76 | 0.3435 |
Target: 5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3' miRNA: 3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 28194 | 0.76 | 0.3435 |
Target: 5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3' miRNA: 3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81069 | 0.75 | 0.374871 |
Target: 5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3' miRNA: 3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 34646 | 0.75 | 0.383011 |
Target: 5'- cCGAG-GCCGAGCGGcGCGccgaGGGGGCGGc -3' miRNA: 3'- cGCUCaCGGCUCGCC-UGC----UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 88256 | 0.75 | 0.408124 |
Target: 5'- cGCGGGgcGCCGGGCGGGgacggGGGGAGCGc -3' miRNA: 3'- -CGCUCa-CGGCUCGCCUg----CUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 130718 | 0.74 | 0.425428 |
Target: 5'- cCGAG-GCCGAGgGGGCGgAGGcGCGGa -3' miRNA: 3'- cGCUCaCGGCUCgCCUGC-UCCuUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32944 | 0.74 | 0.452182 |
Target: 5'- gGCGGG-GCCGGGgGGGCgGAGGAGgcCGGg -3' miRNA: 3'- -CGCUCaCGGCUCgCCUG-CUCCUU--GCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32991 | 0.73 | 0.47983 |
Target: 5'- gGCGGGcagggcgGCCgGAGCGGcCGGGGGGCGc -3' miRNA: 3'- -CGCUCa------CGG-CUCGCCuGCUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 42173 | 0.73 | 0.488286 |
Target: 5'- gGCGGGUGCUG-GCGGaauGCGAGGccuucgcAGCGGa -3' miRNA: 3'- -CGCUCACGGCuCGCC---UGCUCC-------UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27905 | 0.73 | 0.489229 |
Target: 5'- cCGAG-GCCGAGgGGGCgGAGGGcGCGGa -3' miRNA: 3'- cGCUCaCGGCUCgCCUG-CUCCU-UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 34507 | 0.73 | 0.489229 |
Target: 5'- aGCGAG-GCCGAcGCGGACGGcGccGGCGAu -3' miRNA: 3'- -CGCUCaCGGCU-CGCCUGCUcC--UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 22780 | 0.73 | 0.498713 |
Target: 5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3' miRNA: 3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 125593 | 0.73 | 0.498713 |
Target: 5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3' miRNA: 3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 73157 | 0.73 | 0.498713 |
Target: 5'- gGCGGcGcGCCGGGCGGAgGAGGcgGACGc -3' miRNA: 3'- -CGCU-CaCGGCUCGCCUgCUCC--UUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 100528 | 0.73 | 0.498713 |
Target: 5'- uGCGGGUcGCggagUGGGUGGGCGGGGAGCc- -3' miRNA: 3'- -CGCUCA-CG----GCUCGCCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 101082 | 0.73 | 0.517921 |
Target: 5'- cGCGGGgGCCGGGUcGGCGGGGcgGGCGGg -3' miRNA: 3'- -CGCUCaCGGCUCGcCUGCUCC--UUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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