miRNA display CGI


Results 1 - 20 of 767 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 5' -67 NC_001847.1 + 135074 0.67 0.330379
Target:  5'- aGCGGgCCCGGGCc--CGCCGC-GCc -3'
miRNA:   3'- gCGCCgGGGCCCGuccGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 135017 0.74 0.115693
Target:  5'- cCGaGGCCCgCGGGCGGG-GCCGgGGCGc -3'
miRNA:   3'- -GCgCCGGG-GCCCGUCCgCGGUgUCGU- -5'
6380 5' -67 NC_001847.1 + 134919 0.7 0.206246
Target:  5'- gCGCGaGgCCCGGGCucgggcccccGGGCGCCgGgGGCGg -3'
miRNA:   3'- -GCGC-CgGGGCCCG----------UCCGCGG-UgUCGU- -5'
6380 5' -67 NC_001847.1 + 134878 0.77 0.063351
Target:  5'- gGCGGcCCCCGGGCucGGGCcCCugGGCGc -3'
miRNA:   3'- gCGCC-GGGGCCCG--UCCGcGGugUCGU- -5'
6380 5' -67 NC_001847.1 + 134776 0.71 0.170718
Target:  5'- gCGCGGCgCgCgGGGCGGGCcCCGgGGCGc -3'
miRNA:   3'- -GCGCCG-G-GgCCCGUCCGcGGUgUCGU- -5'
6380 5' -67 NC_001847.1 + 134633 0.66 0.382464
Target:  5'- gCGUGGgCUgGGgGCGGGC-CgGCAGCAg -3'
miRNA:   3'- -GCGCCgGGgCC-CGUCCGcGgUGUCGU- -5'
6380 5' -67 NC_001847.1 + 134480 0.68 0.302386
Target:  5'- gCGCGGCCaacgaagugcaCGGGUguaguguGGGCcgugcgGCCGCGGCGc -3'
miRNA:   3'- -GCGCCGGg----------GCCCG-------UCCG------CGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 134412 0.7 0.215075
Target:  5'- gGgGGCCCgCGGGaagggagggaggGGGCGCgACGGCGg -3'
miRNA:   3'- gCgCCGGG-GCCCg-----------UCCGCGgUGUCGU- -5'
6380 5' -67 NC_001847.1 + 134263 0.84 0.018373
Target:  5'- gGCGGCCCCGGcGCGGGcCGCCGCcGCGc -3'
miRNA:   3'- gCGCCGGGGCC-CGUCC-GCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 134215 0.75 0.099693
Target:  5'- gCGCGGgCUCGGGCuucccGGCGCCggcggGCGGCGg -3'
miRNA:   3'- -GCGCCgGGGCCCGu----CCGCGG-----UGUCGU- -5'
6380 5' -67 NC_001847.1 + 134041 0.71 0.1873
Target:  5'- cCGCGGCggcgccgCCCGcGGCcgcGGCGCC-CGGCGu -3'
miRNA:   3'- -GCGCCG-------GGGC-CCGu--CCGCGGuGUCGU- -5'
6380 5' -67 NC_001847.1 + 134023 0.67 0.344712
Target:  5'- gGCGGUCUCGccagcgucGCAGGgGCaCGCGGCGu -3'
miRNA:   3'- gCGCCGGGGCc-------CGUCCgCG-GUGUCGU- -5'
6380 5' -67 NC_001847.1 + 133987 0.7 0.22114
Target:  5'- gCGCGGCCgcgcugCCGGaGCcgcgcgccgAGGCGCCGCcGCu -3'
miRNA:   3'- -GCGCCGG------GGCC-CG---------UCCGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 133648 0.68 0.277487
Target:  5'- gCGCGGCucuacCCCGaGGCGccgccgcugcGGCucuGCCGCGGCGg -3'
miRNA:   3'- -GCGCCG-----GGGC-CCGU----------CCG---CGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 133593 0.68 0.265366
Target:  5'- gGCGcGCUaUCGGGCGGGCggGCUugGGCGg -3'
miRNA:   3'- gCGC-CGG-GGCCCGUCCG--CGGugUCGU- -5'
6380 5' -67 NC_001847.1 + 133526 0.69 0.247993
Target:  5'- cCGCGGUgcugCCgCGGcGCAGuGCGCCGCGcGCu -3'
miRNA:   3'- -GCGCCG----GG-GCC-CGUC-CGCGGUGU-CGu -5'
6380 5' -67 NC_001847.1 + 133484 0.69 0.231572
Target:  5'- gCGaCGGCCCggccguCGGGCAGGCG-CACGuGUAc -3'
miRNA:   3'- -GC-GCCGGG------GCCCGUCCGCgGUGU-CGU- -5'
6380 5' -67 NC_001847.1 + 133259 0.69 0.253677
Target:  5'- uCGCGGCgCUGGGCAaccGGCuGCUGCugAGCGc -3'
miRNA:   3'- -GCGCCGgGGCCCGU---CCG-CGGUG--UCGU- -5'
6380 5' -67 NC_001847.1 + 133214 0.73 0.134064
Target:  5'- gGCGGCCCgaGuGGCcgccGCGCCGCGGCGg -3'
miRNA:   3'- gCGCCGGGg-C-CCGuc--CGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 133165 0.7 0.226305
Target:  5'- cCGCuGCCCgGGG-AGGCGCUGgCGGCGc -3'
miRNA:   3'- -GCGcCGGGgCCCgUCCGCGGU-GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.