miRNA display CGI


Results 1 - 20 of 567 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 3' -62.8 NC_001847.1 + 53276 0.66 0.589851
Target:  5'- cGCGGccgaguccgacgaacGCGCGCUcgaUCGccgccaguGCGGCGGGCGa -3'
miRNA:   3'- -CGCC---------------CGCGUGA---AGCc-------CGCCGUCCGUg -5'
6381 3' -62.8 NC_001847.1 + 12456 0.66 0.589851
Target:  5'- aGCGcGCGCggcggagccuccgcgGCUUCccgcguGGCGGCGGGgGCg -3'
miRNA:   3'- -CGCcCGCG---------------UGAAGc-----CCGCCGUCCgUG- -5'
6381 3' -62.8 NC_001847.1 + 125444 0.66 0.585915
Target:  5'- cGCaGGGCGCGuc-CGGGgagGGCGGGCu- -3'
miRNA:   3'- -CG-CCCGCGUgaaGCCCg--CCGUCCGug -5'
6381 3' -62.8 NC_001847.1 + 81048 0.66 0.585915
Target:  5'- uGCGGGgGCGacgUGGGC-GUGGGCGg -3'
miRNA:   3'- -CGCCCgCGUgaaGCCCGcCGUCCGUg -5'
6381 3' -62.8 NC_001847.1 + 73188 0.66 0.585915
Target:  5'- gGCGGGCacgGCGCg-CGGGCaGGCugcGGUcuGCg -3'
miRNA:   3'- -CGCCCG---CGUGaaGCCCG-CCGu--CCG--UG- -5'
6381 3' -62.8 NC_001847.1 + 133240 0.66 0.585915
Target:  5'- gGCGGGCucucGCACgcgcUCGcGGCGcUGGGCAa -3'
miRNA:   3'- -CGCCCG----CGUGa---AGC-CCGCcGUCCGUg -5'
6381 3' -62.8 NC_001847.1 + 29068 0.66 0.585915
Target:  5'- gGUGGGCuGCG--UgGcGGUGGCGGGCGg -3'
miRNA:   3'- -CGCCCG-CGUgaAgC-CCGCCGUCCGUg -5'
6381 3' -62.8 NC_001847.1 + 69337 0.66 0.585915
Target:  5'- uCGGGCGCug--CuGGCGGCGcuGGUGCu -3'
miRNA:   3'- cGCCCGCGugaaGcCCGCCGU--CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 50847 0.66 0.585915
Target:  5'- cGCGucguacaGCGCGCUUCGGcGCc-CGGGCGCc -3'
miRNA:   3'- -CGCc------CGCGUGAAGCC-CGccGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 12205 0.66 0.585915
Target:  5'- cGUaGGUGCGCUUCuGGCuuGCGcGGCGCg -3'
miRNA:   3'- -CGcCCGCGUGAAGcCCGc-CGU-CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 30427 0.66 0.585915
Target:  5'- gGCGGGCucucGCACgcgcUCGcGGCGcUGGGCAa -3'
miRNA:   3'- -CGCCCG----CGUGa---AGC-CCGCcGUCCGUg -5'
6381 3' -62.8 NC_001847.1 + 69258 0.66 0.585915
Target:  5'- cGCGuGGCGCA---UGGGCGGCcccCACg -3'
miRNA:   3'- -CGC-CCGCGUgaaGCCCGCCGuccGUG- -5'
6381 3' -62.8 NC_001847.1 + 121262 0.66 0.585915
Target:  5'- cCGGGCGCACca---GCGGCAGuGcCGCg -3'
miRNA:   3'- cGCCCGCGUGaagccCGCCGUC-C-GUG- -5'
6381 3' -62.8 NC_001847.1 + 55218 0.66 0.585915
Target:  5'- cGCGa-CGUACUUCGuGGCGGCgacgcuguugggGGaGCACg -3'
miRNA:   3'- -CGCccGCGUGAAGC-CCGCCG------------UC-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 22631 0.66 0.585915
Target:  5'- cGCaGGGCGCGuc-CGGGgagGGCGGGCu- -3'
miRNA:   3'- -CG-CCCGCGUgaaGCCCg--CCGUCCGug -5'
6381 3' -62.8 NC_001847.1 + 13844 0.66 0.585915
Target:  5'- cGCGcGGCGUuuauuCUUCGcugauGGUGGCgaggggGGGCGCc -3'
miRNA:   3'- -CGC-CCGCGu----GAAGC-----CCGCCG------UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 12558 0.66 0.585915
Target:  5'- cGCaGGUGCGCaaCGGGCGccGCGuacgcGGCGCc -3'
miRNA:   3'- -CGcCCGCGUGaaGCCCGC--CGU-----CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 106795 0.66 0.585915
Target:  5'- aGCGGGCggaugacggccGCGCUgcccgCcGGCGaGC-GGCACg -3'
miRNA:   3'- -CGCCCG-----------CGUGAa----GcCCGC-CGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 73358 0.66 0.585915
Target:  5'- cGCGcGUGC-CggCGGGggguCGGCGGGCAUu -3'
miRNA:   3'- -CGCcCGCGuGaaGCCC----GCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 99326 0.66 0.585915
Target:  5'- cCGGGgGCcgaaGCUaaagggUGGGCGGCcGGGCGg -3'
miRNA:   3'- cGCCCgCG----UGAa-----GCCCGCCG-UCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.