miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 97012 0.66 0.899584
Target:  5'- gCGgcGCUgGCCGcgGgggGCAGCgCGUCCu -3'
miRNA:   3'- aGCauCGA-UGGCa-Ca--CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 8205 0.66 0.899584
Target:  5'- cUCGaGGC-GCCGUGccagcagaaGCAGCUgCGCCa -3'
miRNA:   3'- -AGCaUCGaUGGCACa--------CGUCGA-GCGGg -5'
6381 5' -56 NC_001847.1 + 74606 0.66 0.899584
Target:  5'- gCGUGGCcaacGCCaucGUGCAGCUgggcagCGCCUc -3'
miRNA:   3'- aGCAUCGa---UGGca-CACGUCGA------GCGGG- -5'
6381 5' -56 NC_001847.1 + 39224 0.66 0.899584
Target:  5'- cCGggcucagAGCUcguuccaccACCGUcaggcgGUGCgcuuGGCUCGCCCc -3'
miRNA:   3'- aGCa------UCGA---------UGGCA------CACG----UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 35966 0.66 0.899584
Target:  5'- gCGgcGCUGCUGUGgcucccGcCGGCUgGCgCCa -3'
miRNA:   3'- aGCauCGAUGGCACa-----C-GUCGAgCG-GG- -5'
6381 5' -56 NC_001847.1 + 85662 0.66 0.898936
Target:  5'- uUUGgcGCgGCCGUGcugGCGcgcaggcGCUCGCCg -3'
miRNA:   3'- -AGCauCGaUGGCACa--CGU-------CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 70125 0.66 0.892999
Target:  5'- aCGUGGCgcucgcGCCGcuUGCGGUcCGCUCg -3'
miRNA:   3'- aGCAUCGa-----UGGCacACGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 33328 0.66 0.892999
Target:  5'- uUCGUGGCggcgcGCUGcGUGaCGGUggGCCCc -3'
miRNA:   3'- -AGCAUCGa----UGGCaCAC-GUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 117822 0.66 0.892999
Target:  5'- gCGccGGCUacgcgGCCGUGUGCcGCgcCGCCg -3'
miRNA:   3'- aGCa-UCGA-----UGGCACACGuCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 11971 0.66 0.892999
Target:  5'- cUCGaGGCgUGCCGuUGgcgGgGGCUCGCgCa -3'
miRNA:   3'- -AGCaUCG-AUGGC-ACa--CgUCGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 28988 0.66 0.892999
Target:  5'- aCGUgcgccaugcuagAGCgcGCCGUGcuggcGCAGCUaucgCGCCCa -3'
miRNA:   3'- aGCA------------UCGa-UGGCACa----CGUCGA----GCGGG- -5'
6381 5' -56 NC_001847.1 + 132230 0.66 0.892999
Target:  5'- gCGgcGCggACCGUG-GCcccGCUCGCgCg -3'
miRNA:   3'- aGCauCGa-UGGCACaCGu--CGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 29417 0.66 0.892999
Target:  5'- gCGgcGCggACCGUG-GCcccGCUCGCgCg -3'
miRNA:   3'- aGCauCGa-UGGCACaCGu--CGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 35731 0.66 0.892328
Target:  5'- aCGUGGCcGCgGUGgaguggcUGCAGCaagcgCGCUCu -3'
miRNA:   3'- aGCAUCGaUGgCAC-------ACGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 42331 0.66 0.888937
Target:  5'- uUCGUgcugugGGCgcCCGUGUggcgcgGCGGCgacguacucuucgagUCGCCCa -3'
miRNA:   3'- -AGCA------UCGauGGCACA------CGUCG---------------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 35919 0.66 0.886182
Target:  5'- gCGUGGgaGCCuuuGUG-GCGGCgCGCCg -3'
miRNA:   3'- aGCAUCgaUGG---CACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 55153 0.66 0.886182
Target:  5'- gCGgGGCgucaccGCCGcgcaGCGGCUCGCCUg -3'
miRNA:   3'- aGCaUCGa-----UGGCaca-CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 131824 0.66 0.886182
Target:  5'- ---cGGC-GCCGgcgGCAGCggCGCCCg -3'
miRNA:   3'- agcaUCGaUGGCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 100581 0.66 0.886182
Target:  5'- -aGgcGCUGCCGccgcUGCAGCggccgagcaGCCCg -3'
miRNA:   3'- agCauCGAUGGCac--ACGUCGag-------CGGG- -5'
6381 5' -56 NC_001847.1 + 121984 0.66 0.886182
Target:  5'- gCGUGGCUGCCa---GCAGCccaacCGCCg -3'
miRNA:   3'- aGCAUCGAUGGcacaCGUCGa----GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.