miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6382 3' -58.4 NC_001847.1 + 81289 0.66 0.80072
Target:  5'- -gUCGGCGccgccagcgccgccaGCGccGCCgCUGCcGCCGCc -3'
miRNA:   3'- agAGCCGC---------------UGUauCGG-GACGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 63325 0.66 0.797148
Target:  5'- gUUCaGcGCGGCGU-GCuCCUGCucGCCGCc -3'
miRNA:   3'- aGAG-C-CGCUGUAuCG-GGACGu-CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 38960 0.66 0.797148
Target:  5'- --gCGaGCGcCAUGGCg--GCGGCCGCg -3'
miRNA:   3'- agaGC-CGCuGUAUCGggaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 37680 0.66 0.797148
Target:  5'- gCUUaGCG-CGcGGCCCUggcGCGGCUGCg -3'
miRNA:   3'- aGAGcCGCuGUaUCGGGA---CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2206 0.66 0.797148
Target:  5'- cCUCggGGCGGCAgUAGgCCgccaGC-GCCGCg -3'
miRNA:   3'- aGAG--CCGCUGU-AUCgGGa---CGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 7859 0.66 0.797148
Target:  5'- --cCGGUGGC---GCCUgcagagGCGGCCGCc -3'
miRNA:   3'- agaGCCGCUGuauCGGGa-----CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 105019 0.66 0.797148
Target:  5'- cCUCggGGCGGCAgUAGgCCgccaGC-GCCGCg -3'
miRNA:   3'- aGAG--CCGCUGU-AUCgGGa---CGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 89976 0.66 0.797148
Target:  5'- --gCGGCGGaagcGGUgCUGCGcGCCGCg -3'
miRNA:   3'- agaGCCGCUgua-UCGgGACGU-CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 134652 0.66 0.797148
Target:  5'- -gUUGGCGcGCGgccGCCCcGCcGCCGCc -3'
miRNA:   3'- agAGCCGC-UGUau-CGGGaCGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 65991 0.66 0.797148
Target:  5'- ---aGGCGGgAUucAGCCCgaagGCGgacGCCGCg -3'
miRNA:   3'- agagCCGCUgUA--UCGGGa---CGU---CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 100352 0.66 0.797148
Target:  5'- --gCGGCcgcggguCGUAGCCgCgcgccGCGGCCGCg -3'
miRNA:   3'- agaGCCGcu-----GUAUCGG-Ga----CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 128448 0.66 0.797148
Target:  5'- gCUCGGCccugcGCGcgcGCCCgGcCGGCCGCc -3'
miRNA:   3'- aGAGCCGc----UGUau-CGGGaC-GUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 31839 0.66 0.797148
Target:  5'- -gUUGGCGcGCGgccGCCCcGCcGCCGCc -3'
miRNA:   3'- agAGCCGC-UGUau-CGGGaCGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 104533 0.66 0.797148
Target:  5'- --gCGGCGcugcGCGgcGGCCCcGgGGCCGCu -3'
miRNA:   3'- agaGCCGC----UGUa-UCGGGaCgUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 95112 0.66 0.797148
Target:  5'- -aUUGGgGGCGcGGacgagCCUGCAGUCGCc -3'
miRNA:   3'- agAGCCgCUGUaUCg----GGACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 75651 0.66 0.797148
Target:  5'- cCUCGGCG-CAcc-CCCUGCcGGCUGg -3'
miRNA:   3'- aGAGCCGCuGUaucGGGACG-UCGGCg -5'
6382 3' -58.4 NC_001847.1 + 74438 0.66 0.797148
Target:  5'- gUCgUGGCGGCgcacgacgccGUGGCgCUGCAGUacgaGCg -3'
miRNA:   3'- -AGaGCCGCUG----------UAUCGgGACGUCGg---CG- -5'
6382 3' -58.4 NC_001847.1 + 60518 0.66 0.797148
Target:  5'- cCUCGcGCGA---GGCgCUGCccAGCUGCa -3'
miRNA:   3'- aGAGC-CGCUguaUCGgGACG--UCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 54673 0.66 0.797148
Target:  5'- --aCGGgGAgCGcGGCCCgacgGCGGCgGCg -3'
miRNA:   3'- agaGCCgCU-GUaUCGGGa---CGUCGgCG- -5'
6382 3' -58.4 NC_001847.1 + 132976 0.66 0.797148
Target:  5'- ---aGGCGGCGcgGGCgcugcgagaCCUGguGCUGCg -3'
miRNA:   3'- agagCCGCUGUa-UCG---------GGACguCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.