Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 51534 | 0.66 | 0.989332 |
Target: 5'- aGGCGGGggcgGCGCccaggcGUCG-GCGCAgcUCg -3' miRNA: 3'- -CCGUCCa---CGUGc-----UAGCuCGUGUaaAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 127584 | 0.66 | 0.989332 |
Target: 5'- aGGCAGGUGuCGCGcAUgcgcUGAGCAUc---- -3' miRNA: 3'- -CCGUCCAC-GUGC-UA----GCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 100883 | 0.66 | 0.989332 |
Target: 5'- cGGCAGGgGCGCGGccggCGGGagACGgggUCg -3' miRNA: 3'- -CCGUCCaCGUGCUa---GCUCg-UGUaa-AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 124912 | 0.66 | 0.989191 |
Target: 5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3' miRNA: 3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 15545 | 0.66 | 0.989191 |
Target: 5'- uGGCGccGGUGCGCGcgcggccGUCGGGcCGCGg--- -3' miRNA: 3'- -CCGU--CCACGUGC-------UAGCUC-GUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 22099 | 0.66 | 0.989191 |
Target: 5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3' miRNA: 3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 19765 | 0.66 | 0.987849 |
Target: 5'- aGGCGGG-GUGCGGgcUCG-GCGCAgucaUCa -3' miRNA: 3'- -CCGUCCaCGUGCU--AGCuCGUGUaa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 120933 | 0.66 | 0.987849 |
Target: 5'- gGGCGGGcGCGCGggCGugguGGCugAUg-- -3' miRNA: 3'- -CCGUCCaCGUGCuaGC----UCGugUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 57668 | 0.66 | 0.987849 |
Target: 5'- gGGCAGGcgguggGCACGGUgGuGCugGg--- -3' miRNA: 3'- -CCGUCCa-----CGUGCUAgCuCGugUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 41904 | 0.66 | 0.986211 |
Target: 5'- aGGCagAGGUGguCGGcUCgcgGAGCACGUgUUCg -3' miRNA: 3'- -CCG--UCCACguGCU-AG---CUCGUGUA-AAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70256 | 0.66 | 0.986211 |
Target: 5'- cGGCGGGcGCGCGGcguugcucUCGGcGCGCGc--- -3' miRNA: 3'- -CCGUCCaCGUGCU--------AGCU-CGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 26761 | 0.66 | 0.986211 |
Target: 5'- cGCGGGUGCGCGGccuggUCaGuGCGCGc--- -3' miRNA: 3'- cCGUCCACGUGCU-----AG-CuCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 98583 | 0.66 | 0.984408 |
Target: 5'- aGGUAGGcGCGCGG-CGccAGCGCGUc-- -3' miRNA: 3'- -CCGUCCaCGUGCUaGC--UCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 44912 | 0.66 | 0.984408 |
Target: 5'- cGGgGGcGUGCGCGA-CGcGCGCGUg-- -3' miRNA: 3'- -CCgUC-CACGUGCUaGCuCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 15413 | 0.66 | 0.984408 |
Target: 5'- cGGCccuGGagcgcgGCACGG-CGAGCugGUUUa -3' miRNA: 3'- -CCGu--CCa-----CGUGCUaGCUCGugUAAAg -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 95266 | 0.66 | 0.982432 |
Target: 5'- -uCGGGgGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- ccGUCCaCGUGCUAGCUCgUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 23215 | 0.66 | 0.982432 |
Target: 5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3' miRNA: 3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 126028 | 0.66 | 0.982432 |
Target: 5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3' miRNA: 3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 74740 | 0.66 | 0.980274 |
Target: 5'- cGGCGcuUGCGCGcgCGAGCAUg---- -3' miRNA: 3'- -CCGUccACGUGCuaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 56368 | 0.66 | 0.980274 |
Target: 5'- cGCGGGcgGCACGAccUCG-GCGCucgggUCg -3' miRNA: 3'- cCGUCCa-CGUGCU--AGCuCGUGuaa--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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