miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 127584 0.66 0.989332
Target:  5'- aGGCAGGUGuCGCGcAUgcgcUGAGCAUc---- -3'
miRNA:   3'- -CCGUCCAC-GUGC-UA----GCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 51534 0.66 0.989332
Target:  5'- aGGCGGGggcgGCGCccaggcGUCG-GCGCAgcUCg -3'
miRNA:   3'- -CCGUCCa---CGUGc-----UAGCuCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 100883 0.66 0.989332
Target:  5'- cGGCAGGgGCGCGGccggCGGGagACGgggUCg -3'
miRNA:   3'- -CCGUCCaCGUGCUa---GCUCg-UGUaa-AG- -5'
6383 5' -51.2 NC_001847.1 + 22099 0.66 0.989191
Target:  5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 15545 0.66 0.989191
Target:  5'- uGGCGccGGUGCGCGcgcggccGUCGGGcCGCGg--- -3'
miRNA:   3'- -CCGU--CCACGUGC-------UAGCUC-GUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 124912 0.66 0.989191
Target:  5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 19765 0.66 0.987849
Target:  5'- aGGCGGG-GUGCGGgcUCG-GCGCAgucaUCa -3'
miRNA:   3'- -CCGUCCaCGUGCU--AGCuCGUGUaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 57668 0.66 0.987849
Target:  5'- gGGCAGGcgguggGCACGGUgGuGCugGg--- -3'
miRNA:   3'- -CCGUCCa-----CGUGCUAgCuCGugUaaag -5'
6383 5' -51.2 NC_001847.1 + 120933 0.66 0.987849
Target:  5'- gGGCGGGcGCGCGggCGugguGGCugAUg-- -3'
miRNA:   3'- -CCGUCCaCGUGCuaGC----UCGugUAaag -5'
6383 5' -51.2 NC_001847.1 + 41904 0.66 0.986211
Target:  5'- aGGCagAGGUGguCGGcUCgcgGAGCACGUgUUCg -3'
miRNA:   3'- -CCG--UCCACguGCU-AG---CUCGUGUA-AAG- -5'
6383 5' -51.2 NC_001847.1 + 70256 0.66 0.986211
Target:  5'- cGGCGGGcGCGCGGcguugcucUCGGcGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCGUGCU--------AGCU-CGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 26761 0.66 0.986211
Target:  5'- cGCGGGUGCGCGGccuggUCaGuGCGCGc--- -3'
miRNA:   3'- cCGUCCACGUGCU-----AG-CuCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 98583 0.66 0.984408
Target:  5'- aGGUAGGcGCGCGG-CGccAGCGCGUc-- -3'
miRNA:   3'- -CCGUCCaCGUGCUaGC--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 44912 0.66 0.984408
Target:  5'- cGGgGGcGUGCGCGA-CGcGCGCGUg-- -3'
miRNA:   3'- -CCgUC-CACGUGCUaGCuCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 15413 0.66 0.984408
Target:  5'- cGGCccuGGagcgcgGCACGG-CGAGCugGUUUa -3'
miRNA:   3'- -CCGu--CCa-----CGUGCUaGCUCGugUAAAg -5'
6383 5' -51.2 NC_001847.1 + 23215 0.66 0.982432
Target:  5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3'
miRNA:   3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 126028 0.66 0.982432
Target:  5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3'
miRNA:   3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 95266 0.66 0.982432
Target:  5'- -uCGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- ccGUCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 5289 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 37068 0.66 0.980274
Target:  5'- cGGCuGGUGCACGcgGUacuggcccgccUGAGCGCGg--- -3'
miRNA:   3'- -CCGuCCACGUGC--UA-----------GCUCGUGUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.