miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 3' -56.7 NC_001847.1 + 89858 0.66 0.87561
Target:  5'- cGGCUGCaagGCCggcucGCCgcGGCGGgcuUCGCc -3'
miRNA:   3'- cCUGAUGa--CGGaa---CGGa-CCGCC---AGCG- -5'
6401 3' -56.7 NC_001847.1 + 25954 0.66 0.87561
Target:  5'- cGGCUAggGCCaaaggggGCCgcgGGCGGUCa- -3'
miRNA:   3'- cCUGAUgaCGGaa-----CGGa--CCGCCAGcg -5'
6401 3' -56.7 NC_001847.1 + 77224 0.66 0.87561
Target:  5'- cGGGCcGCcggGCCcgGaCUUGGCgcGGUCGCg -3'
miRNA:   3'- -CCUGaUGa--CGGaaC-GGACCG--CCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 128767 0.66 0.87561
Target:  5'- cGGCUAggGCCaaaggggGCCgcgGGCGGUCa- -3'
miRNA:   3'- cCUGAUgaCGGaa-----CGGa--CCGCCAGcg -5'
6401 3' -56.7 NC_001847.1 + 53827 0.66 0.871239
Target:  5'- cGGGCgcgGCUGgCggcggcagcggcgGCgCUGGCGG-CGCu -3'
miRNA:   3'- -CCUGa--UGACgGaa-----------CG-GACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 131392 0.66 0.868282
Target:  5'- aGGGCcucugggACUGCCccgagauccGCgaGGCGGcCGCg -3'
miRNA:   3'- -CCUGa------UGACGGaa-------CGgaCCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 127758 0.66 0.868282
Target:  5'- -aGCUGCgGCggCUUGCCcGGCaGGUgGCg -3'
miRNA:   3'- ccUGAUGaCG--GAACGGaCCG-CCAgCG- -5'
6401 3' -56.7 NC_001847.1 + 28579 0.66 0.868282
Target:  5'- aGGGCcucugggACUGCCccgagauccGCgaGGCGGcCGCg -3'
miRNA:   3'- -CCUGa------UGACGGaa-------CGgaCCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 73581 0.66 0.867538
Target:  5'- uGuCUGCaccucgcgcaccgUGCCgUUGCC-GGCGGcUCGCa -3'
miRNA:   3'- cCuGAUG-------------ACGG-AACGGaCCGCC-AGCG- -5'
6401 3' -56.7 NC_001847.1 + 31862 0.66 0.860742
Target:  5'- cGGGCUcGCcgGCgUUGCUgccGGCGGagcccgUCGCg -3'
miRNA:   3'- -CCUGA-UGa-CGgAACGGa--CCGCC------AGCG- -5'
6401 3' -56.7 NC_001847.1 + 87849 0.66 0.860742
Target:  5'- cGGGCgugAUgGCCcgcggGCCU-GUGGUCGCu -3'
miRNA:   3'- -CCUGa--UGaCGGaa---CGGAcCGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 27679 0.66 0.860742
Target:  5'- cGGAUUcgaGCUGCCUUuauagcGCC-GGCGcaCGCg -3'
miRNA:   3'- -CCUGA---UGACGGAA------CGGaCCGCcaGCG- -5'
6401 3' -56.7 NC_001847.1 + 35689 0.66 0.860742
Target:  5'- cGGcGCUGCUGCUggcgGCCgUGGaGGagGCg -3'
miRNA:   3'- -CC-UGAUGACGGaa--CGG-ACCgCCagCG- -5'
6401 3' -56.7 NC_001847.1 + 48821 0.66 0.860742
Target:  5'- gGGAUguccggGCCUUGCC-GcGCGGgggCGCc -3'
miRNA:   3'- -CCUGauga--CGGAACGGaC-CGCCa--GCG- -5'
6401 3' -56.7 NC_001847.1 + 117447 0.66 0.860742
Target:  5'- -cACUGCggcgugGCCgacaacGCCacUGGCGGUgCGCg -3'
miRNA:   3'- ccUGAUGa-----CGGaa----CGG--ACCGCCA-GCG- -5'
6401 3' -56.7 NC_001847.1 + 134242 0.66 0.852995
Target:  5'- cGGGCgGCgGCCggcgGCCgcGGCGGccccggCGCg -3'
miRNA:   3'- -CCUGaUGaCGGaa--CGGa-CCGCCa-----GCG- -5'
6401 3' -56.7 NC_001847.1 + 18332 0.66 0.852995
Target:  5'- cGGAgCaGCUGCCggGCgCagucGCGGUCGCc -3'
miRNA:   3'- -CCU-GaUGACGGaaCG-Gac--CGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 31429 0.66 0.852995
Target:  5'- cGGGCgGCgGCCggcgGCCgcGGCGGccccggCGCg -3'
miRNA:   3'- -CCUGaUGaCGGaa--CGGa-CCGCCa-----GCG- -5'
6401 3' -56.7 NC_001847.1 + 111273 0.66 0.852995
Target:  5'- cGGAg-GCggcGCCggGCCgggGGCGG-CGCu -3'
miRNA:   3'- -CCUgaUGa--CGGaaCGGa--CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 116383 0.66 0.852995
Target:  5'- cGGCcGCcGCCUUaGCCgcggcGGCGG-CGCu -3'
miRNA:   3'- cCUGaUGaCGGAA-CGGa----CCGCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.