miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 5' -55.5 NC_001847.1 + 71871 0.66 0.901882
Target:  5'- aAGCGGCCG-CGaGcGCGCGGCccGUUGu -3'
miRNA:   3'- aUUGCUGGUaGC-C-CGCGCUGuaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 30054 0.66 0.901882
Target:  5'- cGACGuuGCCGgcgCGguGGCGCGGCugggaGUGCUGu -3'
miRNA:   3'- aUUGC--UGGUa--GC--CCGCGCUG-----UACGAC- -5'
6401 5' -55.5 NC_001847.1 + 100613 0.66 0.901882
Target:  5'- --cCGGCCAggcUCGGGCccugGCGACcgccugGCUGc -3'
miRNA:   3'- auuGCUGGU---AGCCCG----CGCUGua----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 69399 0.66 0.901882
Target:  5'- cGGCGGCCuuugCGGGCcCGGC--GCUGu -3'
miRNA:   3'- aUUGCUGGua--GCCCGcGCUGuaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 50217 0.66 0.901882
Target:  5'- gGACGACUGgccgaugcugcaGGGCGCGGCAgacgacgcggcgaaGCUGg -3'
miRNA:   3'- aUUGCUGGUag----------CCCGCGCUGUa-------------CGAC- -5'
6401 5' -55.5 NC_001847.1 + 4778 0.66 0.901882
Target:  5'- --uCGGCgAagGGGCGUuccagcaugacGGCAUGCUGg -3'
miRNA:   3'- auuGCUGgUagCCCGCG-----------CUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 86813 0.66 0.901882
Target:  5'- gGACGGCaagcgCGGGCGgugcacguguaCGGCGUGCg- -3'
miRNA:   3'- aUUGCUGgua--GCCCGC-----------GCUGUACGac -5'
6401 5' -55.5 NC_001847.1 + 16661 0.66 0.895305
Target:  5'- gUGGCGGCg--CGGGCGCGucgcGCAgccuugGCUGc -3'
miRNA:   3'- -AUUGCUGguaGCCCGCGC----UGUa-----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 74161 0.66 0.895305
Target:  5'- cGACGGCgCcgUGGGCGCGcGCA-GCg- -3'
miRNA:   3'- aUUGCUG-GuaGCCCGCGC-UGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 66694 0.66 0.895305
Target:  5'- --cCGGCCG-CGGGCGCGGaccucUGCg- -3'
miRNA:   3'- auuGCUGGUaGCCCGCGCUgu---ACGac -5'
6401 5' -55.5 NC_001847.1 + 5223 0.66 0.895305
Target:  5'- cGGCGGCCGgcgGGGCGCGcGCG-GCa- -3'
miRNA:   3'- aUUGCUGGUag-CCCGCGC-UGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 108036 0.66 0.895305
Target:  5'- cGGCGGCCGgcgGGGCGCGcGCG-GCa- -3'
miRNA:   3'- aUUGCUGGUag-CCCGCGC-UGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 34755 0.66 0.895305
Target:  5'- -cGCGGCCGagCuGGCGCGGC-UGCg- -3'
miRNA:   3'- auUGCUGGUa-GcCCGCGCUGuACGac -5'
6401 5' -55.5 NC_001847.1 + 69326 0.66 0.895305
Target:  5'- gGGCGcggGCC-UCGGGCGCuGCuggcggcgcugGUGCUGg -3'
miRNA:   3'- aUUGC---UGGuAGCCCGCGcUG-----------UACGAC- -5'
6401 5' -55.5 NC_001847.1 + 86489 0.66 0.895305
Target:  5'- gGACGACgAggcugCGGGgGCGGCG-GCg- -3'
miRNA:   3'- aUUGCUGgUa----GCCCgCGCUGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 37554 0.66 0.895305
Target:  5'- gGGCGGCCcuUCGGaagaCGCGGCGgcGCUGg -3'
miRNA:   3'- aUUGCUGGu-AGCCc---GCGCUGUa-CGAC- -5'
6401 5' -55.5 NC_001847.1 + 76519 0.66 0.894634
Target:  5'- -cGCGGCCuacguccccgCGGGCGCGcuggccaGCGUGUUa -3'
miRNA:   3'- auUGCUGGua--------GCCCGCGC-------UGUACGAc -5'
6401 5' -55.5 NC_001847.1 + 28213 0.66 0.891244
Target:  5'- cGGCGGCguUCGGcccggugaacaugcaGCGCGugGUGgUGg -3'
miRNA:   3'- aUUGCUGguAGCC---------------CGCGCugUACgAC- -5'
6401 5' -55.5 NC_001847.1 + 61058 0.66 0.889182
Target:  5'- -cGCGGCCAUCagccccagggugucuGGCGCGACGccGUUGa -3'
miRNA:   3'- auUGCUGGUAGc--------------CCGCGCUGUa-CGAC- -5'
6401 5' -55.5 NC_001847.1 + 76743 0.66 0.88849
Target:  5'- gAAgGACgGUCGGGCGCucgGGCGggggGCa- -3'
miRNA:   3'- aUUgCUGgUAGCCCGCG---CUGUa---CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.