miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 5' -53.5 NC_001847.1 + 99002 0.66 0.962461
Target:  5'- -cGCUGCAGGcccGCGUCCg-CGGCGCg -3'
miRNA:   3'- ccUGAUGUUCc--UGUAGGgaGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 56273 0.66 0.962461
Target:  5'- cGGGCUgcGCGAGGGCGcgCaCCgCGaGCACa -3'
miRNA:   3'- -CCUGA--UGUUCCUGUa-G-GGaGC-CGUGa -5'
6403 5' -53.5 NC_001847.1 + 74789 0.66 0.962461
Target:  5'- aGGugUGCAcguucGACGggCCCUCGGUAgUg -3'
miRNA:   3'- -CCugAUGUuc---CUGUa-GGGAGCCGUgA- -5'
6403 5' -53.5 NC_001847.1 + 122566 0.66 0.962461
Target:  5'- cGAgUGCGAGGGCG-CCgCguacgCGGCGCc -3'
miRNA:   3'- cCUgAUGUUCCUGUaGG-Ga----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 18982 0.66 0.96211
Target:  5'- cGGAUaaUGCGAaaguuuagcgcacGGGCGgcgCCCUCGGC-CUc -3'
miRNA:   3'- -CCUG--AUGUU-------------CCUGUa--GGGAGCCGuGA- -5'
6403 5' -53.5 NC_001847.1 + 103105 0.66 0.958842
Target:  5'- cGGACcuuucGCGGGGGCuUCCCcgcgCGaGCGCg -3'
miRNA:   3'- -CCUGa----UGUUCCUGuAGGGa---GC-CGUGa -5'
6403 5' -53.5 NC_001847.1 + 7190 0.66 0.958842
Target:  5'- aGGAUUugGAGcGCGUCC-UCGaGCGCg -3'
miRNA:   3'- -CCUGAugUUCcUGUAGGgAGC-CGUGa -5'
6403 5' -53.5 NC_001847.1 + 107828 0.66 0.958842
Target:  5'- aGAUUGCcguGGACAcgCCCgcCGGCACc -3'
miRNA:   3'- cCUGAUGuu-CCUGUa-GGGa-GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 16985 0.66 0.954989
Target:  5'- gGGGC-ACcgucAGGACGUCCUUggcaaCGGCGCc -3'
miRNA:   3'- -CCUGaUGu---UCCUGUAGGGA-----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 53418 0.66 0.954989
Target:  5'- gGGGCUGgAGGGcGCGUgCCgcuuccacCGGCGCg -3'
miRNA:   3'- -CCUGAUgUUCC-UGUAgGGa-------GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 27713 0.66 0.954989
Target:  5'- cGGCggggGCAAGGGCGUCag-CGGCGg- -3'
miRNA:   3'- cCUGa---UGUUCCUGUAGggaGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 100520 0.66 0.954989
Target:  5'- cGGCgcGCAGgcgccGGAC-UUCCUCGGCGCg -3'
miRNA:   3'- cCUGa-UGUU-----CCUGuAGGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 86497 0.66 0.954989
Target:  5'- aGGCUGCGGGGGCGg----CGGCGCc -3'
miRNA:   3'- cCUGAUGUUCCUGUagggaGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 45148 0.66 0.950899
Target:  5'- --uCUGCGGGGuGCAgCCCcgCGGCGCg -3'
miRNA:   3'- ccuGAUGUUCC-UGUaGGGa-GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 134848 0.66 0.950899
Target:  5'- gGGGC-GCGGGGACGgcgCCCgcgcgggcUCGGCGg- -3'
miRNA:   3'- -CCUGaUGUUCCUGUa--GGG--------AGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 93766 0.66 0.950899
Target:  5'- cGGCUgaGCGAGcguGACGUgcgCUCUCGGCGCg -3'
miRNA:   3'- cCUGA--UGUUC---CUGUA---GGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 32035 0.66 0.950899
Target:  5'- gGGGC-GCGGGGACGgcgCCCgcgcgggcUCGGCGg- -3'
miRNA:   3'- -CCUGaUGUUCCUGUa--GGG--------AGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 88895 0.66 0.950899
Target:  5'- cGGCUcccgcCGGGGGCGgcUCCCUUGcGCGCg -3'
miRNA:   3'- cCUGAu----GUUCCUGU--AGGGAGC-CGUGa -5'
6403 5' -53.5 NC_001847.1 + 18194 0.66 0.946569
Target:  5'- cGGACgcgcgGCGAGGuCucgggcuggcgGUCUCUCGGCGg- -3'
miRNA:   3'- -CCUGa----UGUUCCuG-----------UAGGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 83768 0.66 0.946569
Target:  5'- gGGACaccgGCGAGG-CAgCCCUCGaaGCGCc -3'
miRNA:   3'- -CCUGa---UGUUCCuGUaGGGAGC--CGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.