miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 67718 0.65 0.937399
Target:  5'- -aGCG-CGcCGUAGcagcuggccaugCCCCAGCGCGa -3'
miRNA:   3'- caUGCuGC-GCAUCaa----------GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 78049 0.66 0.934413
Target:  5'- -gGCGGCGCGgcGg--UCCAGCGCa- -3'
miRNA:   3'- caUGCUGCGCauCaagGGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 1261 0.66 0.934413
Target:  5'- -aGCGGCGCGccgAGc-CCCCAGCgguugGCGg -3'
miRNA:   3'- caUGCUGCGCa--UCaaGGGGUCG-----UGCa -5'
6411 3' -54.7 NC_001847.1 + 68273 0.66 0.934413
Target:  5'- gGUugGGCGCGUAcacgaagCCCgagAGCGCGUu -3'
miRNA:   3'- -CAugCUGCGCAUcaa----GGGg--UCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 104074 0.66 0.934413
Target:  5'- -aGCGGCGCGccgAGc-CCCCAGCgguugGCGg -3'
miRNA:   3'- caUGCUGCGCa--UCaaGGGGUCG-----UGCa -5'
6411 3' -54.7 NC_001847.1 + 68609 0.66 0.931338
Target:  5'- cUACGGCGCGgucgcugcgcCCCCAGcCGCGc -3'
miRNA:   3'- cAUGCUGCGCaucaa-----GGGGUC-GUGCa -5'
6411 3' -54.7 NC_001847.1 + 134192 0.66 0.92924
Target:  5'- gGUGcCGGCGC--AGUcgUCCCCGgGCGCGg -3'
miRNA:   3'- -CAU-GCUGCGcaUCA--AGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 45527 0.66 0.92924
Target:  5'- -gGCGGCGCGgacgGGgccgugCCgCgCAGCGCGUu -3'
miRNA:   3'- caUGCUGCGCa---UCaa----GG-G-GUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 33711 0.66 0.92924
Target:  5'- -gGCGGCGCGUGG---CCgAGCugGg -3'
miRNA:   3'- caUGCUGCGCAUCaagGGgUCGugCa -5'
6411 3' -54.7 NC_001847.1 + 131319 0.66 0.92924
Target:  5'- -gGCGAgGCGUGG--CCCggCAGCGCGc -3'
miRNA:   3'- caUGCUgCGCAUCaaGGG--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31379 0.66 0.92924
Target:  5'- gGUGcCGGCGC--AGUcgUCCCCGgGCGCGg -3'
miRNA:   3'- -CAU-GCUGCGcaUCA--AGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 118434 0.66 0.92924
Target:  5'- --uCGGCGcCGUGGggCUCCuGCugGUg -3'
miRNA:   3'- cauGCUGC-GCAUCaaGGGGuCGugCA- -5'
6411 3' -54.7 NC_001847.1 + 28506 0.66 0.92924
Target:  5'- -gGCGAgGCGUGG--CCCggCAGCGCGc -3'
miRNA:   3'- caUGCUgCGCAUCaaGGG--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 107922 0.66 0.92924
Target:  5'- uUGCGACcCGcagcucgAGcgCCCCGGCGCGc -3'
miRNA:   3'- cAUGCUGcGCa------UCaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 130843 0.66 0.92924
Target:  5'- -gGCGGCGCGcgAGUaCCaaggcgCCGGCGCGc -3'
miRNA:   3'- caUGCUGCGCa-UCAaGG------GGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 122020 0.66 0.928175
Target:  5'- -gGCGGCGCGgcGccgcccgcgcgCCCCGGcCGCGa -3'
miRNA:   3'- caUGCUGCGCauCaa---------GGGGUC-GUGCa -5'
6411 3' -54.7 NC_001847.1 + 85930 0.66 0.923819
Target:  5'- -cACGAagccCGCGgg---CCCCGGCGCGa -3'
miRNA:   3'- caUGCU----GCGCaucaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 38508 0.66 0.923819
Target:  5'- -gGCGGCGCGg---UCgCCGGCGCuGUg -3'
miRNA:   3'- caUGCUGCGCaucaAGgGGUCGUG-CA- -5'
6411 3' -54.7 NC_001847.1 + 116311 0.66 0.923819
Target:  5'- cGUGCGGCGCGcgcgAGgacgccgUgCCCAuGCGCGc -3'
miRNA:   3'- -CAUGCUGCGCa---UCa------AgGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 42483 0.66 0.923819
Target:  5'- cGUACGuCGCGUuuga-CCCGGCGCu- -3'
miRNA:   3'- -CAUGCuGCGCAucaagGGGUCGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.