miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6414 5' -63.1 NC_001847.1 + 4605 0.66 0.592299
Target:  5'- --cCGCCacagcUCG-GCCaGCUCGgcgCGGGCGg -3'
miRNA:   3'- cucGCGG-----AGCuCGG-CGAGCa--GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 75151 0.66 0.592299
Target:  5'- -cGCGCUgugCGugcuaGGCCGCcgCGUCGGGa- -3'
miRNA:   3'- cuCGCGGa--GC-----UCGGCGa-GCAGCCCgc -5'
6414 5' -63.1 NC_001847.1 + 107604 0.66 0.592299
Target:  5'- cAGcCGCCgCGccGCCGUUC-UCGGGCGu -3'
miRNA:   3'- cUC-GCGGaGCu-CGGCGAGcAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 76388 0.66 0.592299
Target:  5'- cAGCGaCCgUCGcGGCCGCcgccgcUGUCGGGCc -3'
miRNA:   3'- cUCGC-GG-AGC-UCGGCGa-----GCAGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 22204 0.66 0.592299
Target:  5'- cAGCGCCUCccAGCaCGCgucCGU-GGGCGu -3'
miRNA:   3'- cUCGCGGAGc-UCG-GCGa--GCAgCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 79601 0.66 0.592299
Target:  5'- gGGGCGCCgggggCGuugucGCCGgUCGccccgcggCGGGCGc -3'
miRNA:   3'- -CUCGCGGa----GCu----CGGCgAGCa-------GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 56775 0.66 0.592299
Target:  5'- -uGCGCCgCGAuugcccgcccGCCGUUCGUCGcGCu -3'
miRNA:   3'- cuCGCGGaGCU----------CGGCGAGCAGCcCGc -5'
6414 5' -63.1 NC_001847.1 + 125017 0.66 0.592299
Target:  5'- cAGCGCCUCccAGCaCGCgucCGU-GGGCGu -3'
miRNA:   3'- cUCGCGGAGc-UCG-GCGa--GCAgCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 107418 0.66 0.592299
Target:  5'- --cCGCCacagcUCG-GCCaGCUCGgcgCGGGCGg -3'
miRNA:   3'- cucGCGG-----AGCuCGG-CGAGCa--GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 2993 0.66 0.586449
Target:  5'- cGGCGCUg-GAGCCGCgcgcgcuccaccgcgUCG-CGGGCc -3'
miRNA:   3'- cUCGCGGagCUCGGCG---------------AGCaGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 27985 0.66 0.582554
Target:  5'- uGGCGCCgcgcUGGGCCGCgcugcagCG-CGcGGCGu -3'
miRNA:   3'- cUCGCGGa---GCUCGGCGa------GCaGC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 3978 0.66 0.582554
Target:  5'- aGGGCGCCggGGGCCGggCG-CGcGGCc -3'
miRNA:   3'- -CUCGCGGagCUCGGCgaGCaGC-CCGc -5'
6414 5' -63.1 NC_001847.1 + 99685 0.66 0.582554
Target:  5'- uAGCGCCUCucgcGCCGCggccgCGUCGcGCc -3'
miRNA:   3'- cUCGCGGAGcu--CGGCGa----GCAGCcCGc -5'
6414 5' -63.1 NC_001847.1 + 2176 0.66 0.582554
Target:  5'- aGAGCGggugguCCgCGAGCCGCgccgCGaccUCGgGGCGg -3'
miRNA:   3'- -CUCGC------GGaGCUCGGCGa---GC---AGC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 10245 0.66 0.582554
Target:  5'- -cGCGCCUgcCGGGcCCGCUUuUCGGaGCc -3'
miRNA:   3'- cuCGCGGA--GCUC-GGCGAGcAGCC-CGc -5'
6414 5' -63.1 NC_001847.1 + 51368 0.66 0.582554
Target:  5'- gGGGCGCUUCGAggGCUGCcUCGcCGGuGUc -3'
miRNA:   3'- -CUCGCGGAGCU--CGGCG-AGCaGCC-CGc -5'
6414 5' -63.1 NC_001847.1 + 79098 0.66 0.582554
Target:  5'- cGGCGCCUCccagGGGUCG-UCGUCGcGGUc -3'
miRNA:   3'- cUCGCGGAG----CUCGGCgAGCAGC-CCGc -5'
6414 5' -63.1 NC_001847.1 + 100560 0.66 0.582554
Target:  5'- cAGCGCC-CGGGCCuugcGCagGUCGGcGUGc -3'
miRNA:   3'- cUCGCGGaGCUCGG----CGagCAGCC-CGC- -5'
6414 5' -63.1 NC_001847.1 + 51961 0.66 0.582554
Target:  5'- -cGCGCCccccgcCGuccGCCaGCcCGUCGGGCGu -3'
miRNA:   3'- cuCGCGGa-----GCu--CGG-CGaGCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 132474 0.66 0.582554
Target:  5'- cGAGCcgauGCCggcCGAGCCGC----CGGGCGa -3'
miRNA:   3'- -CUCG----CGGa--GCUCGGCGagcaGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.