miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 3' -60.2 NC_001847.1 + 121310 0.66 0.703778
Target:  5'- cGAGCGUGCCcucgCGcaccgucacacgccGGCccccguacaccgcuGCGCCGGCUa -3'
miRNA:   3'- -CUCGCACGGcaa-GC--------------UCG--------------CGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 115695 0.66 0.69981
Target:  5'- gGAGCGgcugGcCCGgcagCGGGCGCG-CGGCc -3'
miRNA:   3'- -CUCGCa---C-GGCaa--GCUCGCGCgGUCGa -5'
6419 3' -60.2 NC_001847.1 + 106092 0.66 0.69981
Target:  5'- -cGCG-GCCGg-CGAGCacgGCGCgCAGCUc -3'
miRNA:   3'- cuCGCaCGGCaaGCUCG---CGCG-GUCGA- -5'
6419 3' -60.2 NC_001847.1 + 56617 0.66 0.69981
Target:  5'- aGGCcgagGCCGcggUCGAGCGCGUCuaccGCg -3'
miRNA:   3'- cUCGca--CGGCa--AGCUCGCGCGGu---CGa -5'
6419 3' -60.2 NC_001847.1 + 46079 0.66 0.69981
Target:  5'- aGAGCGccGCCGaaaccCG-GCGCGCCAuGCc -3'
miRNA:   3'- -CUCGCa-CGGCaa---GCuCGCGCGGU-CGa -5'
6419 3' -60.2 NC_001847.1 + 30247 0.66 0.69981
Target:  5'- -cGCGUGUCGcuggcggcgUUGcAGCGCGCCgcGGCg -3'
miRNA:   3'- cuCGCACGGCa--------AGC-UCGCGCGG--UCGa -5'
6419 3' -60.2 NC_001847.1 + 8635 0.66 0.69981
Target:  5'- gGAGCG-GCCGcugcggacUCGGGCGC-CCAGaCg -3'
miRNA:   3'- -CUCGCaCGGCa-------AGCUCGCGcGGUC-Ga -5'
6419 3' -60.2 NC_001847.1 + 133184 0.66 0.69981
Target:  5'- uGGCGgcGCCGcccggCGAGgacgaGCGCCGGCg -3'
miRNA:   3'- cUCGCa-CGGCaa---GCUCg----CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 36986 0.66 0.69981
Target:  5'- cGAGCGggcccgcGCCGagCGgcggcGGCGCGCUcgAGCUg -3'
miRNA:   3'- -CUCGCa------CGGCaaGC-----UCGCGCGG--UCGA- -5'
6419 3' -60.2 NC_001847.1 + 28742 0.66 0.69981
Target:  5'- cAGCGUcGCCGcgcgCGuGCGUGCCGacGCg -3'
miRNA:   3'- cUCGCA-CGGCaa--GCuCGCGCGGU--CGa -5'
6419 3' -60.2 NC_001847.1 + 106479 0.66 0.69981
Target:  5'- -cGCGcacGUCGUgcgaCGAGCGCGCaaaAGCg -3'
miRNA:   3'- cuCGCa--CGGCAa---GCUCGCGCGg--UCGa -5'
6419 3' -60.2 NC_001847.1 + 12349 0.66 0.69981
Target:  5'- uGAGCGguggGCCuggcUCGGGaGCGUCGGCg -3'
miRNA:   3'- -CUCGCa---CGGca--AGCUCgCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 30371 0.66 0.69981
Target:  5'- uGGCGgcGCCGcccggCGAGgacgaGCGCCGGCg -3'
miRNA:   3'- cUCGCa-CGGCaa---GCUCg----CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 93869 0.66 0.69981
Target:  5'- cGGCGcGCUGc-UGAccGCGCGCCGGCa -3'
miRNA:   3'- cUCGCaCGGCaaGCU--CGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 3279 0.66 0.69981
Target:  5'- -cGCG-GCCGg-CGAGCacgGCGCgCAGCUc -3'
miRNA:   3'- cuCGCaCGGCaaGCUCG---CGCG-GUCGA- -5'
6419 3' -60.2 NC_001847.1 + 79050 0.66 0.69384
Target:  5'- -cGUGUGCCagccccgcacccCGGGCGCGCuCAGCc -3'
miRNA:   3'- cuCGCACGGcaa---------GCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 17061 0.66 0.689851
Target:  5'- cGGGCGgGCgGUaaaCGgccGGCGUGCCAGCc -3'
miRNA:   3'- -CUCGCaCGgCAa--GC---UCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 7014 0.66 0.689851
Target:  5'- cGAGCG-GCCGcgCauccGCcaGCGCCAGCg -3'
miRNA:   3'- -CUCGCaCGGCaaGcu--CG--CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 120925 0.66 0.689851
Target:  5'- cGAG-G-GCgGggCGGGCGCGCgGGCg -3'
miRNA:   3'- -CUCgCaCGgCaaGCUCGCGCGgUCGa -5'
6419 3' -60.2 NC_001847.1 + 112856 0.66 0.689851
Target:  5'- cAGCGUGUCGgccUCGgcGGCGCuGCCuacGGCg -3'
miRNA:   3'- cUCGCACGGCa--AGC--UCGCG-CGG---UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.