miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 5' -55.2 NC_001847.1 + 116613 0.66 0.901378
Target:  5'- uACGGCcUGGCCGGCacccuggagacgaacUCGccagagcUGCUGGcGCg -3'
miRNA:   3'- -UGUCGaACCGGUCG---------------AGCa------ACGACU-CG- -5'
6419 5' -55.2 NC_001847.1 + 47217 0.66 0.89874
Target:  5'- cGCAGggccucCUcGGCCacggcguugAGCUUGUaGCUGGGCa -3'
miRNA:   3'- -UGUC------GAaCCGG---------UCGAGCAaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 109327 0.66 0.898074
Target:  5'- gACAGCcugcccGGCCgacgcggcggagcAGCUCGagGCcGAGCa -3'
miRNA:   3'- -UGUCGaa----CCGG-------------UCGAGCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 100390 0.66 0.896063
Target:  5'- cGCAGCcgcGCCAGCUCGgccgcgucgaagGCgGAGUu -3'
miRNA:   3'- -UGUCGaacCGGUCGAGCaa----------CGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 102575 0.66 0.894709
Target:  5'- cGCAGCUUGGCguccgccaggucgccCAGCgcCGaggGCUGcGCg -3'
miRNA:   3'- -UGUCGAACCG---------------GUCGa-GCaa-CGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 111340 0.66 0.891973
Target:  5'- aGCAGUggucggUGGCC-GC-CGc-GCUGGGCg -3'
miRNA:   3'- -UGUCGa-----ACCGGuCGaGCaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 81233 0.66 0.891973
Target:  5'- gGCAGCggcGGCgGGC-Cag-GCUGGGCc -3'
miRNA:   3'- -UGUCGaa-CCGgUCGaGcaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 71451 0.66 0.891973
Target:  5'- cGCGGCUuugagcugagcgUGGaCCGGCaccg-GCUGAGCc -3'
miRNA:   3'- -UGUCGA------------ACC-GGUCGagcaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 51560 0.66 0.891973
Target:  5'- cGCAGCUc-GCCAGCgcuuccgCGgcGCcgGGGCa -3'
miRNA:   3'- -UGUCGAacCGGUCGa------GCaaCGa-CUCG- -5'
6419 5' -55.2 NC_001847.1 + 33711 0.66 0.884965
Target:  5'- gGCGGCgcgUGGCCgAGCUgGgg---GAGCg -3'
miRNA:   3'- -UGUCGa--ACCGG-UCGAgCaacgaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 72817 0.66 0.880646
Target:  5'- gGCGGCaucggGGCCAuggcGCUCGggcguuuagaguugcUUGCcUGGGCg -3'
miRNA:   3'- -UGUCGaa---CCGGU----CGAGC---------------AACG-ACUCG- -5'
6419 5' -55.2 NC_001847.1 + 108139 0.66 0.877719
Target:  5'- gGCAGaa-GGCCGGCcggUCGgaGCUG-GCu -3'
miRNA:   3'- -UGUCgaaCCGGUCG---AGCaaCGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 5326 0.66 0.877719
Target:  5'- gGCAGaa-GGCCGGCcggUCGgaGCUG-GCu -3'
miRNA:   3'- -UGUCgaaCCGGUCG---AGCaaCGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 46480 0.66 0.876242
Target:  5'- --cGCaUGGCCAGCcagUCGcgcaacagcacGCUGAGCa -3'
miRNA:   3'- uguCGaACCGGUCG---AGCaa---------CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 22106 0.66 0.870999
Target:  5'- uGCGGCUgcuGCCGGCgucccagacgcgcggCGgcgUGCUGgAGCg -3'
miRNA:   3'- -UGUCGAac-CGGUCGa--------------GCa--ACGAC-UCG- -5'
6419 5' -55.2 NC_001847.1 + 63174 0.66 0.870999
Target:  5'- -uGGCUUcGGCCAGCUCGcgccgcgccacgacgUGCgGcGCg -3'
miRNA:   3'- ugUCGAA-CCGGUCGAGCa--------------ACGaCuCG- -5'
6419 5' -55.2 NC_001847.1 + 132795 0.66 0.870241
Target:  5'- cGCGGCcgGGCCGGCgcg--GCggGAGCc -3'
miRNA:   3'- -UGUCGaaCCGGUCGagcaaCGa-CUCG- -5'
6419 5' -55.2 NC_001847.1 + 14291 0.66 0.870241
Target:  5'- cGCGGCgaaauggcgUGGCCGGCcgccucUCGggGCcucaucGAGCg -3'
miRNA:   3'- -UGUCGa--------ACCGGUCG------AGCaaCGa-----CUCG- -5'
6419 5' -55.2 NC_001847.1 + 102578 0.66 0.870241
Target:  5'- gGCAGC--GGCgGGCggCGccauccUGCUGGGCg -3'
miRNA:   3'- -UGUCGaaCCGgUCGa-GCa-----ACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 29982 0.66 0.870241
Target:  5'- cGCGGCcgGGCCGGCgcg--GCggGAGCc -3'
miRNA:   3'- -UGUCGaaCCGGUCGagcaaCGa-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.