miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 3' -54.9 NC_001847.1 + 13322 0.66 0.937432
Target:  5'- -aGUCGGccGAGCuguaccUGCUGGcGCUaCGGCa -3'
miRNA:   3'- ggUAGCC--UUCG------ACGACCaUGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 70201 0.66 0.937432
Target:  5'- aCggCGGAccAGCUGCUGcgcGUGCUgCUGGa -3'
miRNA:   3'- gGuaGCCU--UCGACGAC---CAUGA-GGCCg -5'
6423 3' -54.9 NC_001847.1 + 5354 0.66 0.932444
Target:  5'- -gGUCGcGcGGCgcgGCcGGgcccagGCUCCGGCg -3'
miRNA:   3'- ggUAGC-CuUCGa--CGaCCa-----UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 115784 0.66 0.932444
Target:  5'- gCCAgagcguUCGcGGAGCcGCUGcgGCUCCGcGCg -3'
miRNA:   3'- -GGU------AGC-CUUCGaCGACcaUGAGGC-CG- -5'
6423 3' -54.9 NC_001847.1 + 118439 0.66 0.932444
Target:  5'- gCCGUgGGGcucCUGCUGGUGgcggccucgugcCUgCGGCg -3'
miRNA:   3'- -GGUAgCCUuc-GACGACCAU------------GAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 53341 0.66 0.932444
Target:  5'- gCCGcagCGGAAagcgacgcGCUGCUGGcgGCcgCgGGCa -3'
miRNA:   3'- -GGUa--GCCUU--------CGACGACCa-UGa-GgCCG- -5'
6423 3' -54.9 NC_001847.1 + 42460 0.66 0.927213
Target:  5'- aCCGUCccccuGAAGgUGCUGGUGgggCGGCg -3'
miRNA:   3'- -GGUAGc----CUUCgACGACCAUgagGCCG- -5'
6423 3' -54.9 NC_001847.1 + 69705 0.66 0.927213
Target:  5'- aCA-CGGgcGg-GCUGGU-CUCCGGUc -3'
miRNA:   3'- gGUaGCCuuCgaCGACCAuGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 35953 0.66 0.927213
Target:  5'- ---cUGGgcGCUGCUGGcggcgcUGCUgUGGCu -3'
miRNA:   3'- gguaGCCuuCGACGACC------AUGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 29512 0.66 0.927213
Target:  5'- gCCggCGGAGGUgccggcgcgGCUGGcggccgcGCUCgCGGCc -3'
miRNA:   3'- -GGuaGCCUUCGa--------CGACCa------UGAG-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 132325 0.66 0.927213
Target:  5'- gCCggCGGAGGUgccggcgcgGCUGGcggccgcGCUCgCGGCc -3'
miRNA:   3'- -GGuaGCCUUCGa--------CGACCa------UGAG-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 43415 0.66 0.92174
Target:  5'- aCG-CGGAccucgcGCUGCUGcUGCUggCCGGCg -3'
miRNA:   3'- gGUaGCCUu-----CGACGACcAUGA--GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 53828 0.66 0.92174
Target:  5'- gCCGgagCGGggGC-GCUGaagagCCGGCg -3'
miRNA:   3'- -GGUa--GCCuuCGaCGACcaugaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 123031 0.66 0.92174
Target:  5'- cUCGUcCGGggGCcGCUGGaagUACggccgCgGGCg -3'
miRNA:   3'- -GGUA-GCCuuCGaCGACC---AUGa----GgCCG- -5'
6423 3' -54.9 NC_001847.1 + 103948 0.66 0.916023
Target:  5'- aCCAgCGGcGGCgccucgGCgcgcgGCUCCGGCa -3'
miRNA:   3'- -GGUaGCCuUCGa-----CGacca-UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 1135 0.66 0.916023
Target:  5'- aCCAgCGGcGGCgccucgGCgcgcgGCUCCGGCa -3'
miRNA:   3'- -GGUaGCCuUCGa-----CGacca-UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 20060 0.66 0.916023
Target:  5'- aCGUuugCGGGAGCgGCgUGGcgGCUCCcgcGGCg -3'
miRNA:   3'- gGUA---GCCUUCGaCG-ACCa-UGAGG---CCG- -5'
6423 3' -54.9 NC_001847.1 + 8629 0.66 0.916023
Target:  5'- gCCGggggagCGGccGCUGC-GG-ACUCgGGCg -3'
miRNA:   3'- -GGUa-----GCCuuCGACGaCCaUGAGgCCG- -5'
6423 3' -54.9 NC_001847.1 + 29767 0.67 0.910064
Target:  5'- aCUGUCGGcccuGGCgGCcGG-GCUCUGGCc -3'
miRNA:   3'- -GGUAGCCu---UCGaCGaCCaUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 66849 0.67 0.910064
Target:  5'- gCCAUCGcGAAGaUGCUGGcaGCU-CGGUc -3'
miRNA:   3'- -GGUAGC-CUUCgACGACCa-UGAgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.