miRNA display CGI


Results 41 - 60 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 130615 0.73 0.505888
Target:  5'- gCgGGGGCCACCGaggGCGCCGAGg---- -3'
miRNA:   3'- -GgCCUCGGUGGCg--CGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 130611 0.67 0.823601
Target:  5'- cCCGcGGGCgGCCGC-CGCgAGGCAc-- -3'
miRNA:   3'- -GGC-CUCGgUGGCGcGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 130523 0.77 0.280894
Target:  5'- gCCGGcgGGCCGCC-CGCGCCGAGCu--- -3'
miRNA:   3'- -GGCC--UCGGUGGcGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 130317 0.68 0.785029
Target:  5'- gCCGGcGGCCccacgcucaagggcAUCGCGCGCCucguccAGCAUGc -3'
miRNA:   3'- -GGCC-UCGG--------------UGGCGCGCGGu-----UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 130105 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 129781 0.8 0.203931
Target:  5'- gCCGGAGCCugggcccggccgcGCCGCGCGaCCAGuacuACGUGAa -3'
miRNA:   3'- -GGCCUCGG-------------UGGCGCGC-GGUU----UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 129693 0.69 0.709964
Target:  5'- gCGGccGCCACCGC-CGUCGGGCAa-- -3'
miRNA:   3'- gGCCu-CGGUGGCGcGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 129559 0.8 0.204443
Target:  5'- gUGGAGCUACCGCGCGgccaCCAGGCAUu- -3'
miRNA:   3'- gGCCUCGGUGGCGCGC----GGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 129472 0.7 0.66911
Target:  5'- gCGGccGCCGCCGCGCGC--GACGg-- -3'
miRNA:   3'- gGCCu-CGGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 129369 0.73 0.457047
Target:  5'- cCCGGGGCUagacGCCGCGCuucgcguuggcgcGCCGGACGg-- -3'
miRNA:   3'- -GGCCUCGG----UGGCGCG-------------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 128467 0.7 0.648462
Target:  5'- cCCGGccGGCCGCCGCG-GCCuAGCc--- -3'
miRNA:   3'- -GGCC--UCGGUGGCGCgCGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 128075 0.71 0.565986
Target:  5'- cCCGGgcGGCuCGCCGCGUGCCuugguGGCGa-- -3'
miRNA:   3'- -GGCC--UCG-GUGGCGCGCGGu----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 128034 0.7 0.66911
Target:  5'- -aGGAGCCcgGCCGUGgCGCCu-ACGUGGu -3'
miRNA:   3'- ggCCUCGG--UGGCGC-GCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 127915 0.69 0.720031
Target:  5'- cCCGaccAGCCGCUGCaGCGCCAugGACGg-- -3'
miRNA:   3'- -GGCc--UCGGUGGCG-CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 127242 0.79 0.237219
Target:  5'- gCGGcGGCCGCCGCGCGCCccGCGc-- -3'
miRNA:   3'- gGCC-UCGGUGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 126693 0.66 0.848603
Target:  5'- cCCGGcGCCGCCuccgacccgGCGCcGCCuccgacccGACAUGAu -3'
miRNA:   3'- -GGCCuCGGUGG---------CGCG-CGGu-------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 126055 0.67 0.796997
Target:  5'- uCCGaGAGCgGcaccCCGCGCGCguAGCAg-- -3'
miRNA:   3'- -GGC-CUCGgU----GGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 124576 0.75 0.370117
Target:  5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3'
miRNA:   3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 124087 0.74 0.44869
Target:  5'- -aGGugaacuGCCGCCGCuGCgGCCAAGCAUAGu -3'
miRNA:   3'- ggCCu-----CGGUGGCG-CG-CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 123790 0.67 0.806029
Target:  5'- cUCGGGGCCugCGCggcggcggcaGCGgCAGGCGc-- -3'
miRNA:   3'- -GGCCUCGGugGCG----------CGCgGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.