miRNA display CGI


Results 41 - 60 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 132058 0.74 0.44869
Target:  5'- gCCGGccGCgGCCuGCGCGCCGGACGc-- -3'
miRNA:   3'- -GGCCu-CGgUGG-CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 54179 0.76 0.346098
Target:  5'- cCCGGAGCacuuugACCGCGCGCUcgcGGACAa-- -3'
miRNA:   3'- -GGCCUCGg-----UGGCGCGCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 30612 0.81 0.171233
Target:  5'- cCCGGGGCCGCCGCgcaGCGCCGcaAACGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCG---CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 132389 0.74 0.44869
Target:  5'- gCCGGcGCCggcGCCGcCGCGCCGGGCcgGGg -3'
miRNA:   3'- -GGCCuCGG---UGGC-GCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 103179 0.84 0.112833
Target:  5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3'
miRNA:   3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 19398 0.71 0.564967
Target:  5'- gCCGGugugugugcccauGGCCACCaGCGCGCCcguGGCGg-- -3'
miRNA:   3'- -GGCC-------------UCGGUGG-CGCGCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103309 0.8 0.189574
Target:  5'- gCGGGGCgGCCGCGCGCCAAc----- -3'
miRNA:   3'- gGCCUCGgUGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 105730 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 69749 0.72 0.545699
Target:  5'- gUGGccuGCCACCGCGCGCUGuuCAg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCGCGGUuuGUauu -5'
6424 3' -56.3 NC_001847.1 + 36612 0.72 0.515732
Target:  5'- aCCGGGuguGCUACCGCGCGgUggGCGa-- -3'
miRNA:   3'- -GGCCU---CGGUGGCGCGCgGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 130615 0.73 0.505888
Target:  5'- gCgGGGGCCACCGaggGCGCCGAGg---- -3'
miRNA:   3'- -GgCCUCGGUGGCg--CGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 72225 0.73 0.48645
Target:  5'- -aGGAGCCGcCCGCGgGCCccGAGCAc-- -3'
miRNA:   3'- ggCCUCGGU-GGCGCgCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 43454 0.73 0.467373
Target:  5'- cCCGGGGCgACgGCGCggucGCCGAGCGc-- -3'
miRNA:   3'- -GGCCUCGgUGgCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 117272 0.74 0.438591
Target:  5'- gCGGGGCCGCCGUuuuggggcgccccGCGCCcGACGa-- -3'
miRNA:   3'- gGCCUCGGUGGCG-------------CGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 3361 0.74 0.412607
Target:  5'- gCCGGccGCCGcaauCCGCGCGCCGAGCc--- -3'
miRNA:   3'- -GGCCu-CGGU----GGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 75932 0.75 0.39525
Target:  5'- gUGGcGCCGCCGUGCGCCGccacacgcGGCGUGu -3'
miRNA:   3'- gGCCuCGGUGGCGCGCGGU--------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 124576 0.75 0.370117
Target:  5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3'
miRNA:   3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 101071 0.76 0.330717
Target:  5'- cCCGGGGCCGCCGCGgggGCCGggUcgGc -3'
miRNA:   3'- -GGCCUCGGUGGCGCg--CGGUuuGuaUu -5'
6424 3' -56.3 NC_001847.1 + 52685 0.77 0.301483
Target:  5'- gCCGGGGCCgggcccGCCGCGCcuggaGCCAAGCGc-- -3'
miRNA:   3'- -GGCCUCGG------UGGCGCG-----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103707 0.78 0.2552
Target:  5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.