Results 1 - 20 of 269 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 99060 | 0.66 | 0.414913 |
Target: 5'- uGCCC-GCCaG-GCCCGGGgccgccucuucgugcUGGgGCCu -3' miRNA: 3'- gCGGGaCGG-CaCGGGCCC---------------ACCgCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 59211 | 0.66 | 0.414913 |
Target: 5'- cCGUCCgcGCCGUGCgcuugcacgcgucggCCGucGGcgaUGGCGCCGg -3' miRNA: 3'- -GCGGGa-CGGCACG---------------GGC--CC---ACCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 89624 | 0.66 | 0.411664 |
Target: 5'- gGCCCcGuCCGcgccGCCCGGcGgcGGCGCCc -3' miRNA: 3'- gCGGGaC-GGCa---CGGGCC-Ca-CCGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 4534 | 0.66 | 0.411664 |
Target: 5'- uGCCUcGCgGcgGCCgcccgCGGGUGGCGCgGc -3' miRNA: 3'- gCGGGaCGgCa-CGG-----GCCCACCGCGgC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 29914 | 0.66 | 0.411664 |
Target: 5'- gCGCCC-GCCuGUGCCCGcgcgcccgcGGUGG-GCgGu -3' miRNA: 3'- -GCGGGaCGG-CACGGGC---------CCACCgCGgC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 35997 | 0.66 | 0.411664 |
Target: 5'- cCGCgCUGCaGgcgGCCgCGGGcgUGGUGCUGg -3' miRNA: 3'- -GCGgGACGgCa--CGG-GCCC--ACCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 127029 | 0.66 | 0.411664 |
Target: 5'- cCGCCCcGCgGUuguacgggGCCacguGGGUcGGCGCCu -3' miRNA: 3'- -GCGGGaCGgCA--------CGGg---CCCA-CCGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 37180 | 0.66 | 0.411664 |
Target: 5'- aGCCUcgcGCCGggagaGCCCGGuGcgaGGCGCCc -3' miRNA: 3'- gCGGGa--CGGCa----CGGGCC-Ca--CCGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 79094 | 0.66 | 0.411664 |
Target: 5'- uGCCCgugcgccgcGCCGUGCCUGuGGaagaaGGCccGCCGc -3' miRNA: 3'- gCGGGa--------CGGCACGGGC-CCa----CCG--CGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 88239 | 0.66 | 0.411664 |
Target: 5'- aGCCgagGCCG-GCgCGGcGcggGGCGCCGg -3' miRNA: 3'- gCGGga-CGGCaCGgGCC-Ca--CCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 24216 | 0.66 | 0.411664 |
Target: 5'- cCGCCCcGCgGUuguacgggGCCacguGGGUcGGCGCCu -3' miRNA: 3'- -GCGGGaCGgCA--------CGGg---CCCA-CCGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 12690 | 0.66 | 0.403611 |
Target: 5'- aCGcCCCUGCCcaGCCuCaGGUagaGGUGCCGc -3' miRNA: 3'- -GC-GGGACGGcaCGG-GcCCA---CCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 121670 | 0.66 | 0.403611 |
Target: 5'- cCGCCgCUGUgGggugcgGCCCGagcaGGUGcGCGCCc -3' miRNA: 3'- -GCGG-GACGgCa-----CGGGC----CCAC-CGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 124290 | 0.66 | 0.403611 |
Target: 5'- gCGCCC-GCCGcGCCuCGGccacGCGCCGc -3' miRNA: 3'- -GCGGGaCGGCaCGG-GCCcac-CGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 15060 | 0.66 | 0.403611 |
Target: 5'- gCGCCauCUGaCCGgcgGCCCGGGgauCGCCu -3' miRNA: 3'- -GCGG--GAC-GGCa--CGGGCCCaccGCGGc -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 84647 | 0.66 | 0.403611 |
Target: 5'- gGCCCgcGCCGUugauagauacGgCCGGaccGGCGCCGg -3' miRNA: 3'- gCGGGa-CGGCA----------CgGGCCca-CCGCGGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 71476 | 0.66 | 0.403611 |
Target: 5'- gGCaCCgGCUGaGCCCGgcaacGGUGGCGgCGg -3' miRNA: 3'- gCG-GGaCGGCaCGGGC-----CCACCGCgGC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 1 | 0.66 | 0.403611 |
Target: 5'- gGCCCaGCCcccGCgCGGGgGGCGCgGa -3' miRNA: 3'- gCGGGaCGGca-CGgGCCCaCCGCGgC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 35218 | 0.66 | 0.402811 |
Target: 5'- gCGCCCUGCgcgcggaCGUGCugcaggcggCCGGcG-GGCGCgCGg -3' miRNA: 3'- -GCGGGACG-------GCACG---------GGCC-CaCCGCG-GC- -5' |
|||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 48766 | 0.66 | 0.401215 |
Target: 5'- gCGCCCgccGCCGcgGCCCGccgccucgucugcgGGCGCCu -3' miRNA: 3'- -GCGGGa--CGGCa-CGGGCcca-----------CCGCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home