miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 59211 0.66 0.414913
Target:  5'- cCGUCCgcGCCGUGCgcuugcacgcgucggCCGucGGcgaUGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---------------GGC--CC---ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 99060 0.66 0.414913
Target:  5'- uGCCC-GCCaG-GCCCGGGgccgccucuucgugcUGGgGCCu -3'
miRNA:   3'- gCGGGaCGG-CaCGGGCCC---------------ACCgCGGc -5'
6424 5' -67.3 NC_001847.1 + 24216 0.66 0.411664
Target:  5'- cCGCCCcGCgGUuguacgggGCCacguGGGUcGGCGCCu -3'
miRNA:   3'- -GCGGGaCGgCA--------CGGg---CCCA-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 37180 0.66 0.411664
Target:  5'- aGCCUcgcGCCGggagaGCCCGGuGcgaGGCGCCc -3'
miRNA:   3'- gCGGGa--CGGCa----CGGGCC-Ca--CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 29914 0.66 0.411664
Target:  5'- gCGCCC-GCCuGUGCCCGcgcgcccgcGGUGG-GCgGu -3'
miRNA:   3'- -GCGGGaCGG-CACGGGC---------CCACCgCGgC- -5'
6424 5' -67.3 NC_001847.1 + 4534 0.66 0.411664
Target:  5'- uGCCUcGCgGcgGCCgcccgCGGGUGGCGCgGc -3'
miRNA:   3'- gCGGGaCGgCa-CGG-----GCCCACCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 127029 0.66 0.411664
Target:  5'- cCGCCCcGCgGUuguacgggGCCacguGGGUcGGCGCCu -3'
miRNA:   3'- -GCGGGaCGgCA--------CGGg---CCCA-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 79094 0.66 0.411664
Target:  5'- uGCCCgugcgccgcGCCGUGCCUGuGGaagaaGGCccGCCGc -3'
miRNA:   3'- gCGGGa--------CGGCACGGGC-CCa----CCG--CGGC- -5'
6424 5' -67.3 NC_001847.1 + 35997 0.66 0.411664
Target:  5'- cCGCgCUGCaGgcgGCCgCGGGcgUGGUGCUGg -3'
miRNA:   3'- -GCGgGACGgCa--CGG-GCCC--ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 89624 0.66 0.411664
Target:  5'- gGCCCcGuCCGcgccGCCCGGcGgcGGCGCCc -3'
miRNA:   3'- gCGGGaC-GGCa---CGGGCC-Ca-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 88239 0.66 0.411664
Target:  5'- aGCCgagGCCG-GCgCGGcGcggGGCGCCGg -3'
miRNA:   3'- gCGGga-CGGCaCGgGCC-Ca--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 12690 0.66 0.403611
Target:  5'- aCGcCCCUGCCcaGCCuCaGGUagaGGUGCCGc -3'
miRNA:   3'- -GC-GGGACGGcaCGG-GcCCA---CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 84647 0.66 0.403611
Target:  5'- gGCCCgcGCCGUugauagauacGgCCGGaccGGCGCCGg -3'
miRNA:   3'- gCGGGa-CGGCA----------CgGGCCca-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 71476 0.66 0.403611
Target:  5'- gGCaCCgGCUGaGCCCGgcaacGGUGGCGgCGg -3'
miRNA:   3'- gCG-GGaCGGCaCGGGC-----CCACCGCgGC- -5'
6424 5' -67.3 NC_001847.1 + 1 0.66 0.403611
Target:  5'- gGCCCaGCCcccGCgCGGGgGGCGCgGa -3'
miRNA:   3'- gCGGGaCGGca-CGgGCCCaCCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 15060 0.66 0.403611
Target:  5'- gCGCCauCUGaCCGgcgGCCCGGGgauCGCCu -3'
miRNA:   3'- -GCGG--GAC-GGCa--CGGGCCCaccGCGGc -5'
6424 5' -67.3 NC_001847.1 + 124290 0.66 0.403611
Target:  5'- gCGCCC-GCCGcGCCuCGGccacGCGCCGc -3'
miRNA:   3'- -GCGGGaCGGCaCGG-GCCcac-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 121670 0.66 0.403611
Target:  5'- cCGCCgCUGUgGggugcgGCCCGagcaGGUGcGCGCCc -3'
miRNA:   3'- -GCGG-GACGgCa-----CGGGC----CCAC-CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 35218 0.66 0.402811
Target:  5'- gCGCCCUGCgcgcggaCGUGCugcaggcggCCGGcG-GGCGCgCGg -3'
miRNA:   3'- -GCGGGACG-------GCACG---------GGCC-CaCCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 48766 0.66 0.401215
Target:  5'- gCGCCCgccGCCGcgGCCCGccgccucgucugcgGGCGCCu -3'
miRNA:   3'- -GCGGGa--CGGCa-CGGGCcca-----------CCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.