miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 71114 0.66 0.960434
Target:  5'- gGCGUgaaCCGCGGGCAAGcCcgUCccGCCg- -3'
miRNA:   3'- -CGUA---GGCGCCCGUUCuGa-AGu-UGGag -5'
6442 3' -53.4 NC_001847.1 + 38899 0.66 0.960434
Target:  5'- uGCcgCCGCcGGCccuGACUcCGGCCUg -3'
miRNA:   3'- -CGuaGGCGcCCGuu-CUGAaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 114428 0.66 0.960434
Target:  5'- aGCgGUCCGCcaGCGGGGCcUCGuCCUCg -3'
miRNA:   3'- -CG-UAGGCGccCGUUCUGaAGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 60011 0.66 0.960434
Target:  5'- aGCGcgaCGUGGGCaAAGAgCgugccgUCGGCCUCu -3'
miRNA:   3'- -CGUag-GCGCCCG-UUCU-Ga-----AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 17771 0.66 0.960067
Target:  5'- aGCAUCCacuuGCGcuccuucGGCGGGGCUuugcUCGGCCg- -3'
miRNA:   3'- -CGUAGG----CGC-------CCGUUCUGA----AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 123522 0.66 0.956655
Target:  5'- gGCugCCGCGGGCucGGCUaaGGCCa- -3'
miRNA:   3'- -CGuaGGCGCCCGuuCUGAagUUGGag -5'
6442 3' -53.4 NC_001847.1 + 76304 0.66 0.956655
Target:  5'- cGCAgcgCCGCGGGCAccgucgUCcACCUa -3'
miRNA:   3'- -CGUa--GGCGCCCGUucuga-AGuUGGAg -5'
6442 3' -53.4 NC_001847.1 + 17882 0.66 0.956655
Target:  5'- cCGUCCuCGGGCGGGGCgggCGGCg-- -3'
miRNA:   3'- cGUAGGcGCCCGUUCUGaa-GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 3980 0.66 0.956655
Target:  5'- gGCG-CCGgGGGCcGGGCgcgCGGCCcCg -3'
miRNA:   3'- -CGUaGGCgCCCGuUCUGaa-GUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 98375 0.66 0.956655
Target:  5'- cGCGU-CGCGGGCGc-GCU-CGAUCUCc -3'
miRNA:   3'- -CGUAgGCGCCCGUucUGAaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 119572 0.66 0.956655
Target:  5'- --cUCUGCGGGCAGcGGCggccgCGGCC-Cg -3'
miRNA:   3'- cguAGGCGCCCGUU-CUGaa---GUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 16312 0.66 0.956655
Target:  5'- uCAcCCGCGGcGCGGGugUaggCAAgCUCa -3'
miRNA:   3'- cGUaGGCGCC-CGUUCugAa--GUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 99848 0.66 0.956264
Target:  5'- cGCG-CCGCucGGCGGGGCUgcgCAguacguuACCUCu -3'
miRNA:   3'- -CGUaGGCGc-CCGUUCUGAa--GU-------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 68937 0.66 0.952636
Target:  5'- gGCggCCGCGGGCugcGcCUcCAGCCa- -3'
miRNA:   3'- -CGuaGGCGCCCGuu-CuGAaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 68503 0.66 0.952636
Target:  5'- gGCG-CCGC--GCGAGAacUCAACCUCg -3'
miRNA:   3'- -CGUaGGCGccCGUUCUgaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 63833 0.66 0.952636
Target:  5'- aCGUCCGCGGGCcccaaaAAGAagUCAaacGCCg- -3'
miRNA:   3'- cGUAGGCGCCCG------UUCUgaAGU---UGGag -5'
6442 3' -53.4 NC_001847.1 + 36842 0.66 0.952636
Target:  5'- aCAgCCGCGGGCAAGcCcaCGGCUUg -3'
miRNA:   3'- cGUaGGCGCCCGUUCuGaaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 73375 0.66 0.952636
Target:  5'- -gGUCgGCGGGCAuuGuCUUCGggACCUg -3'
miRNA:   3'- cgUAGgCGCCCGUu-CuGAAGU--UGGAg -5'
6442 3' -53.4 NC_001847.1 + 13481 0.66 0.952636
Target:  5'- ---gUCGCGGGCuuGGCcUCGGCCaUCa -3'
miRNA:   3'- cguaGGCGCCCGuuCUGaAGUUGG-AG- -5'
6442 3' -53.4 NC_001847.1 + 70693 0.66 0.952636
Target:  5'- cGCcgCCGCGGGCGGcGGCgggggCGcCCg- -3'
miRNA:   3'- -CGuaGGCGCCCGUU-CUGaa---GUuGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.