miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 86987 0.66 0.920953
Target:  5'- gGCcGGGCCGGCgcgcgCCGgCCCGGc -3'
miRNA:   3'- -UGcUCCGGUUGaaauaGGCgGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 31223 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5'
6442 5' -55.2 NC_001847.1 + 100965 0.66 0.920953
Target:  5'- aGCGGGGCuCGGCg----CCgaGCUCCGAGc -3'
miRNA:   3'- -UGCUCCG-GUUGaaauaGG--CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 134036 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5'
6442 5' -55.2 NC_001847.1 + 122774 0.66 0.920953
Target:  5'- cCGAGGCCGcaGCcgccgaCGCuCCCGAGc -3'
miRNA:   3'- uGCUCCGGU--UGaaauagGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 74987 0.66 0.920953
Target:  5'- gGCGGGGCgccaGGCUcaGUCCGCCggCGGGc -3'
miRNA:   3'- -UGCUCCGg---UUGAaaUAGGCGGg-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 123505 0.66 0.920953
Target:  5'- aGCGGGGCCGggGCcagggCUGCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35221 0.66 0.915173
Target:  5'- gGCGGGGUCcgUUgcgcCUGCCUCGAGg -3'
miRNA:   3'- -UGCUCCGGuuGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 23806 0.66 0.915173
Target:  5'- cGCGGcGGCCAccgaccacuGCUcgcgGUCCagcgcgcgcacgGCCCCGAGc -3'
miRNA:   3'- -UGCU-CCGGU---------UGAaa--UAGG------------CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 88189 0.66 0.913987
Target:  5'- gUGGGGCCGGCUccuuggcUUcgCCGCacgcggcccggagCCCGGGc -3'
miRNA:   3'- uGCUCCGGUUGA-------AAuaGGCG-------------GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 132704 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 29891 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 103772 0.66 0.913391
Target:  5'- gACGAcugcgccggcacccGGCCGGCggggcuUCCGCCgCCGGc -3'
miRNA:   3'- -UGCU--------------CCGGUUGaaau--AGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 3573 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 46772 0.66 0.909148
Target:  5'- cGCGGGGCCG-----GUCCGCCgCGc- -3'
miRNA:   3'- -UGCUCCGGUugaaaUAGGCGGgGCuc -5'
6442 5' -55.2 NC_001847.1 + 80662 0.66 0.909148
Target:  5'- gGCGccGCCGucgUUGUCCGUCCCGc- -3'
miRNA:   3'- -UGCucCGGUugaAAUAGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 33213 0.66 0.909148
Target:  5'- cGCGGguGGCuCGGCUUggcgCCGCgCCGGGc -3'
miRNA:   3'- -UGCU--CCG-GUUGAAaua-GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 106386 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 92380 0.66 0.909148
Target:  5'- gACGcucggaAGGCCGuccuggaucuGCU--GUCCGCCCCGc- -3'
miRNA:   3'- -UGC------UCCGGU----------UGAaaUAGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 117271 0.66 0.909148
Target:  5'- uGCGGGGCCGccgUUUUGgggcgccCCGCgCCCGAc -3'
miRNA:   3'- -UGCUCCGGUu--GAAAUa------GGCG-GGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.