miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 36327 0.67 0.875452
Target:  5'- cGCGAGGgu-GCguccugCCGCCCCGAu -3'
miRNA:   3'- -UGCUCCgguUGaaaua-GGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 35795 0.66 0.896375
Target:  5'- -aGGGGCCAAg---AUCCGCCCgGc- -3'
miRNA:   3'- ugCUCCGGUUgaaaUAGGCGGGgCuc -5'
6442 5' -55.2 NC_001847.1 + 26521 0.67 0.89168
Target:  5'- cGCGGGGCCGggggcguucggccauGCUUUcaugcaaAUgaGCCCCGAc -3'
miRNA:   3'- -UGCUCCGGU---------------UGAAA-------UAggCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 80581 0.67 0.889632
Target:  5'- cGCGGGGCCGucguccuccGCg----CCGCCCCc-- -3'
miRNA:   3'- -UGCUCCGGU---------UGaaauaGGCGGGGcuc -5'
6442 5' -55.2 NC_001847.1 + 69693 0.67 0.889632
Target:  5'- cGCGGGGCCGGCgcucgGUCCGCggcgCgCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaa--UAGGCG----GgGCUc -5'
6442 5' -55.2 NC_001847.1 + 624 0.67 0.888256
Target:  5'- cGCGcGGCCcGCgccuccccCCGcCCCCGAGg -3'
miRNA:   3'- -UGCuCCGGuUGaaaua---GGC-GGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 40973 0.67 0.886869
Target:  5'- cGCGAGGCgGccGCgcccagcagCCGCCgCGAGa -3'
miRNA:   3'- -UGCUCCGgU--UGaaaua----GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 80735 0.67 0.883364
Target:  5'- cCGAGGCCAACcgcggcggcgcCCGCCUCGc- -3'
miRNA:   3'- uGCUCCGGUUGaaaua------GGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 14204 0.67 0.882656
Target:  5'- gGCGGGGCUGGCg--GUCagGCCggCCGGGg -3'
miRNA:   3'- -UGCUCCGGUUGaaaUAGg-CGG--GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 30821 0.66 0.896375
Target:  5'- cCGAGGCCGccuacGCgcggcUCUaCCCCGAGg -3'
miRNA:   3'- uGCUCCGGU-----UGaaau-AGGcGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 34294 0.66 0.896375
Target:  5'- gGCG-GGCCGGCgc--UCCGgCCCUGGc -3'
miRNA:   3'- -UGCuCCGGUUGaaauAGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 85027 0.66 0.900955
Target:  5'- cCGAGGCCAGCcggcgcucuacgCCGCCCgGc- -3'
miRNA:   3'- uGCUCCGGUUGaaaua-------GGCGGGgCuc -5'
6442 5' -55.2 NC_001847.1 + 86987 0.66 0.920953
Target:  5'- gGCcGGGCCGGCgcgcgCCGgCCCGGc -3'
miRNA:   3'- -UGcUCCGGUUGaaauaGGCgGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 31223 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5'
6442 5' -55.2 NC_001847.1 + 35221 0.66 0.915173
Target:  5'- gGCGGGGUCcgUUgcgcCUGCCUCGAGg -3'
miRNA:   3'- -UGCUCCGGuuGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 29891 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 80662 0.66 0.909148
Target:  5'- gGCGccGCCGucgUUGUCCGUCCCGc- -3'
miRNA:   3'- -UGCucCGGUugaAAUAGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 3573 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 64746 0.66 0.908533
Target:  5'- cACGAgguccguaaucuuGGCCAGCgcgagcUCgCGCCCCGGc -3'
miRNA:   3'- -UGCU-------------CCGGUUGaaau--AG-GCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 44197 0.66 0.902882
Target:  5'- uCGAGaGCCAGCUggugUUGCCCCa-- -3'
miRNA:   3'- uGCUC-CGGUUGAaauaGGCGGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.