Results 1 - 20 of 524 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6447 | 5' | -62.9 | NC_001847.1 | + | 118473 | 0.66 | 0.59838 |
Target: 5'- uGCGGCGCaaggcccgggCGCGcCUGUaGGcGCGGGGc -3' miRNA: 3'- cCGUCGCG----------GCGC-GACG-CCuUGCCCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 44882 | 0.66 | 0.59838 |
Target: 5'- aGCucuuuuuCGCCuaccacGUGCUGCGGA-CGGGGGc -3' miRNA: 3'- cCGuc-----GCGG------CGCGACGCCUuGCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 16410 | 0.66 | 0.59838 |
Target: 5'- uGGCAGCGCuuuuccCGCGuCUGCGaGGcCGGcGAc -3' miRNA: 3'- -CCGUCGCG------GCGC-GACGC-CUuGCCcCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 9493 | 0.66 | 0.59838 |
Target: 5'- aGCugcGCGCCGCGacgaGCGGAcccgagccgaGCGGGcGGc -3' miRNA: 3'- cCGu--CGCGGCGCga--CGCCU----------UGCCC-CU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 66485 | 0.66 | 0.59838 |
Target: 5'- cGGCA-CGUCGUGCgugucggccaGCGGcGCGGuGGAg -3' miRNA: 3'- -CCGUcGCGGCGCGa---------CGCCuUGCC-CCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 27906 | 0.66 | 0.59838 |
Target: 5'- cGGCccgGCCGCGCuUGCGGAGgccaGGGcGGc -3' miRNA: 3'- -CCGucgCGGCGCG-ACGCCUUg---CCC-CU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 54349 | 0.66 | 0.59838 |
Target: 5'- cGGacCAGCGCaacgaggaCGCGCUGCGcGAgcugcuGCGGcGGGc -3' miRNA: 3'- -CC--GUCGCG--------GCGCGACGC-CU------UGCC-CCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 49919 | 0.66 | 0.59838 |
Target: 5'- cGGUGGCGCUGCGCgUGCGc-ACGuuGGAc -3' miRNA: 3'- -CCGUCGCGGCGCG-ACGCcuUGCc-CCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 8142 | 0.66 | 0.59838 |
Target: 5'- gGGCGGUGCUGCGCga-GGGcuaGuuGGGAa -3' miRNA: 3'- -CCGUCGCGGCGCGacgCCU---UgcCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 93744 | 0.66 | 0.59838 |
Target: 5'- cGGCAGCuggagGCCGCGCgGCuGccGGCGGcGGc -3' miRNA: 3'- -CCGUCG-----CGGCGCGaCGcC--UUGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 56741 | 0.66 | 0.59838 |
Target: 5'- aGCAGCGCgCcCGCaGCGG--CGGGGu -3' miRNA: 3'- cCGUCGCG-GcGCGaCGCCuuGCCCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 111349 | 0.66 | 0.59838 |
Target: 5'- cGGUGGcCGCCGCGCUGgGcGAccucGCGcccGGGc -3' miRNA: 3'- -CCGUC-GCGGCGCGACgC-CU----UGC---CCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 127205 | 0.66 | 0.59838 |
Target: 5'- gGGCuaCGCCGCaaGCUGCaaaacGGCGGGGGa -3' miRNA: 3'- -CCGucGCGGCG--CGACGcc---UUGCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 32380 | 0.66 | 0.59838 |
Target: 5'- cGGCgucgcgGGCGUCGCGCcuUGCG---UGGGGGg -3' miRNA: 3'- -CCG------UCGCGGCGCG--ACGCcuuGCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 96190 | 0.66 | 0.59838 |
Target: 5'- cGGCAGCGgCaaugGCGggGcCGGAGuCGGGGc -3' miRNA: 3'- -CCGUCGCgG----CGCgaC-GCCUU-GCCCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 73507 | 0.66 | 0.597401 |
Target: 5'- uGGCGGCGCUGCaGUccaGCGGGcgcauguACGuGGGc -3' miRNA: 3'- -CCGUCGCGGCG-CGa--CGCCU-------UGC-CCCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 96780 | 0.66 | 0.594466 |
Target: 5'- -cCGGUGCCgGCGCUGgGGcugaagcuggguCGGGGGg -3' miRNA: 3'- ccGUCGCGG-CGCGACgCCuu----------GCCCCU- -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 68911 | 0.66 | 0.588604 |
Target: 5'- aGCGcCGCCGCGCUGagguuCGGcGCGGcGGc -3' miRNA: 3'- cCGUcGCGGCGCGAC-----GCCuUGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 60876 | 0.66 | 0.588604 |
Target: 5'- cGCAGCG-CGCGC-GCGGGccccagcaGCGGcGGc -3' miRNA: 3'- cCGUCGCgGCGCGaCGCCU--------UGCC-CCu -5' |
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6447 | 5' | -62.9 | NC_001847.1 | + | 74496 | 0.66 | 0.588604 |
Target: 5'- uGCAGCaGCCGCGcCUGCGccGCGcgcuGGAc -3' miRNA: 3'- cCGUCG-CGGCGC-GACGCcuUGCc---CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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