miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 3' -51.7 NC_001847.1 + 65493 0.66 0.986868
Target:  5'- -cGGUCCAUGGCGCG-GugU-GggGc -3'
miRNA:   3'- guUCAGGUGCUGCGCgCugAaCuuCu -5'
6448 3' -51.7 NC_001847.1 + 135140 0.66 0.986868
Target:  5'- gGGGcCCGCG-CgGCGCGGCgcgGAGGG -3'
miRNA:   3'- gUUCaGGUGCuG-CGCGCUGaa-CUUCU -5'
6448 3' -51.7 NC_001847.1 + 45858 0.66 0.986868
Target:  5'- cCGAGgccucggCCGCGGCGCGCGAa------- -3'
miRNA:   3'- -GUUCa------GGUGCUGCGCGCUgaacuucu -5'
6448 3' -51.7 NC_001847.1 + 58018 0.66 0.986868
Target:  5'- -cGGU-CGCG-CGCGCGcCUUGAAGc -3'
miRNA:   3'- guUCAgGUGCuGCGCGCuGAACUUCu -5'
6448 3' -51.7 NC_001847.1 + 34377 0.66 0.985152
Target:  5'- gCGAGcgCCAUGGCGCGgGGCgaccuGGAc -3'
miRNA:   3'- -GUUCa-GGUGCUGCGCgCUGaacu-UCU- -5'
6448 3' -51.7 NC_001847.1 + 72582 0.66 0.985152
Target:  5'- cCGAGcaaCCGCGGC-CGCGGCggcaGAAGGg -3'
miRNA:   3'- -GUUCa--GGUGCUGcGCGCUGaa--CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 7224 0.66 0.985152
Target:  5'- --cGUCCAUGGCGCugcaGCGGCUgGucGGg -3'
miRNA:   3'- guuCAGGUGCUGCG----CGCUGAaCuuCU- -5'
6448 3' -51.7 NC_001847.1 + 52244 0.66 0.98327
Target:  5'- cCGGGcgCCGCG-CGcCGCGGCUUGGc-- -3'
miRNA:   3'- -GUUCa-GGUGCuGC-GCGCUGAACUucu -5'
6448 3' -51.7 NC_001847.1 + 12588 0.66 0.98327
Target:  5'- -uAGagCGCGACGaGCGGCUgucgGAAGGg -3'
miRNA:   3'- guUCagGUGCUGCgCGCUGAa---CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 56300 0.66 0.98327
Target:  5'- -cAGUCUGCGGCgucGCGCGGCgggcgcgcGAAGGc -3'
miRNA:   3'- guUCAGGUGCUG---CGCGCUGaa------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 24765 0.66 0.981213
Target:  5'- gAGGU--GCGACGCGCGGuCgucGAAGAg -3'
miRNA:   3'- gUUCAggUGCUGCGCGCU-Gaa-CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 30200 0.66 0.981213
Target:  5'- -cGGUgCGCGGCGCGCG-CgccGAAGc -3'
miRNA:   3'- guUCAgGUGCUGCGCGCuGaa-CUUCu -5'
6448 3' -51.7 NC_001847.1 + 53281 0.66 0.981213
Target:  5'- cCGAGUCCgACGaACGCGCG-CUcGAu-- -3'
miRNA:   3'- -GUUCAGG-UGC-UGCGCGCuGAaCUucu -5'
6448 3' -51.7 NC_001847.1 + 83160 0.66 0.978973
Target:  5'- --cGUCCGCGAUGCGcCGGCg------ -3'
miRNA:   3'- guuCAGGUGCUGCGC-GCUGaacuucu -5'
6448 3' -51.7 NC_001847.1 + 52513 0.66 0.978973
Target:  5'- gGAG-CgCGCGGcCGCGCGGCccgGggGAu -3'
miRNA:   3'- gUUCaG-GUGCU-GCGCGCUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 35891 0.66 0.978973
Target:  5'- gGAGUCgGCGGCG-GCGGCgUGGGa- -3'
miRNA:   3'- gUUCAGgUGCUGCgCGCUGaACUUcu -5'
6448 3' -51.7 NC_001847.1 + 25349 0.66 0.978738
Target:  5'- --cGUCCACGugGCggcggucGCGGCgauccgcacGAAGAa -3'
miRNA:   3'- guuCAGGUGCugCG-------CGCUGaa-------CUUCU- -5'
6448 3' -51.7 NC_001847.1 + 85078 0.67 0.97654
Target:  5'- cCGGGUCCGCGccGCGCGCGGa------- -3'
miRNA:   3'- -GUUCAGGUGC--UGCGCGCUgaacuucu -5'
6448 3' -51.7 NC_001847.1 + 33488 0.67 0.97654
Target:  5'- gCGAuGUCCGCGGCG-GCGGCgcgGgcGGc -3'
miRNA:   3'- -GUU-CAGGUGCUGCgCGCUGaa-CuuCU- -5'
6448 3' -51.7 NC_001847.1 + 36781 0.67 0.97654
Target:  5'- --cGcCCGCGACGCG-GACUuUGggGc -3'
miRNA:   3'- guuCaGGUGCUGCGCgCUGA-ACuuCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.