miRNA display CGI


Results 1 - 20 of 1224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 5' -62 NC_001847.1 + 77363 0.65 0.658718
Target:  5'- --aGCGgccaccagCCCGGCGAGCAccagcagccccgugGCCagcGCGCCg -3'
miRNA:   3'- gagCGCg-------GGGCCGCUCGU--------------UGG---CGUGG- -5'
6473 5' -62 NC_001847.1 + 58720 0.65 0.657735
Target:  5'- gUCGCGgccaccccgggcucCUCCGGCGgcccgacagcggcGGCGGCCGCGa- -3'
miRNA:   3'- gAGCGC--------------GGGGCCGC-------------UCGUUGGCGUgg -5'
6473 5' -62 NC_001847.1 + 103299 0.66 0.651838
Target:  5'- --aGCGgCggCGGCgGGGCGGCCGCGCg -3'
miRNA:   3'- gagCGCgGg-GCCG-CUCGUUGGCGUGg -5'
6473 5' -62 NC_001847.1 + 43486 0.66 0.651838
Target:  5'- aUCGCGUCCCGcCGcGCcGCCGUcgAUCg -3'
miRNA:   3'- gAGCGCGGGGCcGCuCGuUGGCG--UGG- -5'
6473 5' -62 NC_001847.1 + 9848 0.66 0.651838
Target:  5'- --gGCGCCCUGGUGuG-GACCGaCGCa -3'
miRNA:   3'- gagCGCGGGGCCGCuCgUUGGC-GUGg -5'
6473 5' -62 NC_001847.1 + 98972 0.66 0.651838
Target:  5'- -cCGCGCaccgCCGcaaGCGuugccuGCAGCCGCugCa -3'
miRNA:   3'- gaGCGCGg---GGC---CGCu-----CGUUGGCGugG- -5'
6473 5' -62 NC_001847.1 + 112969 0.66 0.651838
Target:  5'- gCUCuCGCCCgagcaGGCcGGCccGCUGCGCCg -3'
miRNA:   3'- -GAGcGCGGGg----CCGcUCGu-UGGCGUGG- -5'
6473 5' -62 NC_001847.1 + 92580 0.66 0.651838
Target:  5'- -cCGCGCCgCCgaGGagGAcGCGGCCGCGuCCu -3'
miRNA:   3'- gaGCGCGG-GG--CCg-CU-CGUUGGCGU-GG- -5'
6473 5' -62 NC_001847.1 + 89042 0.66 0.651838
Target:  5'- -gUGCGCgCUgGGCGAcgGCAuggCGCGCCg -3'
miRNA:   3'- gaGCGCG-GGgCCGCU--CGUug-GCGUGG- -5'
6473 5' -62 NC_001847.1 + 121612 0.66 0.651838
Target:  5'- gUCGCGCugCCUaGCG-GCAGCCGC-UCg -3'
miRNA:   3'- gAGCGCG--GGGcCGCuCGUUGGCGuGG- -5'
6473 5' -62 NC_001847.1 + 46081 0.66 0.651838
Target:  5'- --aGCGCCgccgaaacCCGGCGcGCcauGCCGuCGCCc -3'
miRNA:   3'- gagCGCGG--------GGCCGCuCGu--UGGC-GUGG- -5'
6473 5' -62 NC_001847.1 + 132808 0.66 0.651838
Target:  5'- -cCGUGCaaaaCGGCGGGUu-CCGCGCa -3'
miRNA:   3'- gaGCGCGgg--GCCGCUCGuuGGCGUGg -5'
6473 5' -62 NC_001847.1 + 110191 0.66 0.651838
Target:  5'- -cUGCGCCaCCuGcCGGGCAagccGCCGCAgCu -3'
miRNA:   3'- gaGCGCGG-GGcC-GCUCGU----UGGCGUgG- -5'
6473 5' -62 NC_001847.1 + 133521 0.66 0.651838
Target:  5'- -gCGCGCCgCGGUGcuGCcGCgGCGCa -3'
miRNA:   3'- gaGCGCGGgGCCGCu-CGuUGgCGUGg -5'
6473 5' -62 NC_001847.1 + 118661 0.66 0.651838
Target:  5'- --aGUGCCCCacccaggcagGGCGGGgGuuggGCCGgGCCg -3'
miRNA:   3'- gagCGCGGGG----------CCGCUCgU----UGGCgUGG- -5'
6473 5' -62 NC_001847.1 + 125059 0.66 0.651838
Target:  5'- gCUUGUGCuCCCGcGCGcGGCGGggcgcugggcCCGCGCg -3'
miRNA:   3'- -GAGCGCG-GGGC-CGC-UCGUU----------GGCGUGg -5'
6473 5' -62 NC_001847.1 + 109834 0.66 0.651838
Target:  5'- -cCGCGCCCCuGUGGaCGaccACCGCAgCu -3'
miRNA:   3'- gaGCGCGGGGcCGCUcGU---UGGCGUgG- -5'
6473 5' -62 NC_001847.1 + 94183 0.66 0.651838
Target:  5'- --gGcCGCCUCGcGCGGGCAguucgaggcGCUGCGCg -3'
miRNA:   3'- gagC-GCGGGGC-CGCUCGU---------UGGCGUGg -5'
6473 5' -62 NC_001847.1 + 118178 0.66 0.651838
Target:  5'- -cUGCGCUggaCGGUGcGCGACgGCAUCg -3'
miRNA:   3'- gaGCGCGGg--GCCGCuCGUUGgCGUGG- -5'
6473 5' -62 NC_001847.1 + 49942 0.66 0.651838
Target:  5'- uUgGaCGCCgUGGCGcGCGguGCCGCGCa -3'
miRNA:   3'- gAgC-GCGGgGCCGCuCGU--UGGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.