miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 134820 0.69 0.673932
Target:  5'- aCGCGG-GCGUggagCGCGA--AGCUCCGg -3'
miRNA:   3'- -GCGUCgCGCAa---GCGCUagUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 134122 0.68 0.763454
Target:  5'- uGCGGCGCGc-CGCGggCGGCggCCu- -3'
miRNA:   3'- gCGUCGCGCaaGCGCuaGUCGa-GGug -5'
6474 3' -56.8 NC_001847.1 + 133526 0.66 0.826843
Target:  5'- cCGCGGUGCugcCGCGGcgCAGUgcgCCGCg -3'
miRNA:   3'- -GCGUCGCGcaaGCGCUa-GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 133427 0.7 0.612267
Target:  5'- cCGCGGCGCGgcggCGgcUGAUCGuGCUCgACg -3'
miRNA:   3'- -GCGUCGCGCaa--GC--GCUAGU-CGAGgUG- -5'
6474 3' -56.8 NC_001847.1 + 132547 0.7 0.653424
Target:  5'- gCGCGGCGgGcUCGCGugcggccgCGGCggCCGCg -3'
miRNA:   3'- -GCGUCGCgCaAGCGCua------GUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 132299 0.69 0.714462
Target:  5'- gCGCuGGCGCGcgCGCuguUCAGC-CCGCc -3'
miRNA:   3'- -GCG-UCGCGCaaGCGcu-AGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 132268 0.66 0.843469
Target:  5'- gCGCGGCGCGgcggccCGCGcGUCGGC-CUg- -3'
miRNA:   3'- -GCGUCGCGCaa----GCGC-UAGUCGaGGug -5'
6474 3' -56.8 NC_001847.1 + 132181 0.66 0.83525
Target:  5'- gGCGGCGCuGcgCGcCGAggCGGCcgCCGCg -3'
miRNA:   3'- gCGUCGCG-CaaGC-GCUa-GUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 132139 0.72 0.541087
Target:  5'- cCGCGaCGCGguggagCGCGcgCGGCUCCAg -3'
miRNA:   3'- -GCGUcGCGCaa----GCGCuaGUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 131921 0.7 0.632846
Target:  5'- gCGCGG-GCGgcgCGCGAgCGGCUgCGCg -3'
miRNA:   3'- -GCGUCgCGCaa-GCGCUaGUCGAgGUG- -5'
6474 3' -56.8 NC_001847.1 + 131263 0.69 0.704413
Target:  5'- cCGCGGCGCcg-CGCGAcgGGCcgCCGCc -3'
miRNA:   3'- -GCGUCGCGcaaGCGCUagUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 131222 0.69 0.694302
Target:  5'- gCGcCAGCGCGggCGCGcaacCGGCgcCCGCg -3'
miRNA:   3'- -GC-GUCGCGCaaGCGCua--GUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 130765 0.74 0.392115
Target:  5'- cCGCGGCGCGcgcgcUCGCGGUCgcgguggaGGCggCCGCg -3'
miRNA:   3'- -GCGUCGCGCa----AGCGCUAG--------UCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 130726 0.66 0.851494
Target:  5'- uGCGGCGCGcgcugcCGCcGUCGGCgUCgACg -3'
miRNA:   3'- gCGUCGCGCaa----GCGcUAGUCG-AGgUG- -5'
6474 3' -56.8 NC_001847.1 + 130600 0.66 0.866934
Target:  5'- aCGCcGCGCcaccCGCGggCGGCcgCCGCg -3'
miRNA:   3'- -GCGuCGCGcaa-GCGCuaGUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 130493 0.72 0.499689
Target:  5'- aCGCGGCGCGUcgggcugaggcgCGCGAgcgcCGGCgggCCGCc -3'
miRNA:   3'- -GCGUCGCGCAa-----------GCGCUa---GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 130209 0.66 0.826843
Target:  5'- gGCGGCGCGgagggCGCGGgaagcgCGGCggcccuaacgaCCGCg -3'
miRNA:   3'- gCGUCGCGCaa---GCGCUa-----GUCGa----------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 125898 0.67 0.818258
Target:  5'- cCGCAGCGU---UGCGGucaaUCAGCcCCGCc -3'
miRNA:   3'- -GCGUCGCGcaaGCGCU----AGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 125089 0.69 0.694302
Target:  5'- gCGCAGCGCGcgCGUG-UCGGCcgUgACg -3'
miRNA:   3'- -GCGUCGCGCaaGCGCuAGUCGa-GgUG- -5'
6474 3' -56.8 NC_001847.1 + 124647 0.7 0.653424
Target:  5'- aGCAGCGCGgggccgUCGgGGaagccCAGCUCgGCc -3'
miRNA:   3'- gCGUCGCGCa-----AGCgCUa----GUCGAGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.