miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 3' -57.9 NC_001847.1 + 108619 0.66 0.842202
Target:  5'- aACGUGCUccGgGgGAcgGCGGGCgacgcugcagaagugGCCGGg -3'
miRNA:   3'- -UGCGCGA--CgCgCUuaUGCUCG---------------CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 116749 0.66 0.830814
Target:  5'- cCGCGCUGUGCuucugcGCGGGgccUGCUGGg -3'
miRNA:   3'- uGCGCGACGCGcuua--UGCUC---GCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 95300 0.66 0.830814
Target:  5'- gGC-CGCUgGCGCcuccagGCGcGGCGCCGGc -3'
miRNA:   3'- -UGcGCGA-CGCGcuua--UGC-UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 36709 1.1 0.001564
Target:  5'- cACGCGCUGCGCGAAUACGAGCGCCGGa -3'
miRNA:   3'- -UGCGCGACGCGCUUAUGCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 97877 0.66 0.838984
Target:  5'- cGCGUcccagucgGCgGCGCGGAUgGCGAacagcGCGCCGu -3'
miRNA:   3'- -UGCG--------CGaCGCGCUUA-UGCU-----CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 91813 0.66 0.838984
Target:  5'- uCGCGCcGCGCGGcgAUG-GCaGCaCGGc -3'
miRNA:   3'- uGCGCGaCGCGCUuaUGCuCG-CG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 70699 0.66 0.838984
Target:  5'- cGCGgGCgGCgGCGGGggcgcccgcgGCGAGCGCgaGGa -3'
miRNA:   3'- -UGCgCGaCG-CGCUUa---------UGCUCGCGg-CC- -5'
6476 3' -57.9 NC_001847.1 + 65518 0.66 0.838984
Target:  5'- cGCGCGCaGUGCGGccgccCGGccGCGCCGc -3'
miRNA:   3'- -UGCGCGaCGCGCUuau--GCU--CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 103760 0.66 0.838984
Target:  5'- cGCGCGCUGgGacuuGggUGCucaGGGCgcgcucGCCGGc -3'
miRNA:   3'- -UGCGCGACgCg---CuuAUG---CUCG------CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 95690 0.66 0.830814
Target:  5'- cGCGgGCcgcucugGCGCGGGggGCG-GCGCgGGc -3'
miRNA:   3'- -UGCgCGa------CGCGCUUa-UGCuCGCGgCC- -5'
6476 3' -57.9 NC_001847.1 + 44947 0.66 0.838984
Target:  5'- uCGgGCUGgGCGAcgGC--GCGCCGc -3'
miRNA:   3'- uGCgCGACgCGCUuaUGcuCGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 123102 0.66 0.838984
Target:  5'- aGCGCGCaGgGCGuccaGCGcucCGCCGGg -3'
miRNA:   3'- -UGCGCGaCgCGCuua-UGCuc-GCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 60745 0.66 0.838984
Target:  5'- cGCGCGC-GCGCG---GCGGcCGCgCGGu -3'
miRNA:   3'- -UGCGCGaCGCGCuuaUGCUcGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 120887 0.66 0.838175
Target:  5'- -gGCGCUuggcauucaaGCGUGAuggcuauauaggcAUACGAGgGCgGGg -3'
miRNA:   3'- ugCGCGA----------CGCGCU-------------UAUGCUCgCGgCC- -5'
6476 3' -57.9 NC_001847.1 + 57448 0.66 0.838984
Target:  5'- aGCGCGC-GCGCGc--ACGccgccuugaAGCGCuCGGc -3'
miRNA:   3'- -UGCGCGaCGCGCuuaUGC---------UCGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 13003 0.66 0.838984
Target:  5'- cCGCGCgGCGCcc-UGC--GCGCCGGc -3'
miRNA:   3'- uGCGCGaCGCGcuuAUGcuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 95744 0.66 0.830814
Target:  5'- cGCGgGCcgcucugGCGCGGGggGCG-GCGCgGGc -3'
miRNA:   3'- -UGCgCGa------CGCGCUUa-UGCuCGCGgCC- -5'
6476 3' -57.9 NC_001847.1 + 107711 0.66 0.830814
Target:  5'- -gGCGCU-CGCGG--GCGGGCaccCCGGg -3'
miRNA:   3'- ugCGCGAcGCGCUuaUGCUCGc--GGCC- -5'
6476 3' -57.9 NC_001847.1 + 112051 0.66 0.838984
Target:  5'- -gGCGC-GCGCGGGcUACGuagagGGCGCCc- -3'
miRNA:   3'- ugCGCGaCGCGCUU-AUGC-----UCGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 82730 0.66 0.838984
Target:  5'- cACGCGCgggcccaGCGCcugGAGcACG-GCGCCGu -3'
miRNA:   3'- -UGCGCGa------CGCG---CUUaUGCuCGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.