miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 5' -55.5 NC_001847.1 + 121272 0.66 0.890811
Target:  5'- cAGCGgcAGUGCcGCgUCCGcuAGCaGGCu -3'
miRNA:   3'- -UCGU--UCACGaCGgAGGCuuUCGcCUG- -5'
6476 5' -55.5 NC_001847.1 + 101863 0.66 0.890811
Target:  5'- gAGCAGGUcgcggaggaGCUcGCCUuuGcgcGCGGACc -3'
miRNA:   3'- -UCGUUCA---------CGA-CGGAggCuuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 120238 0.66 0.890811
Target:  5'- cGGCGAG-GCagucgGCCUgCGc--GCGGACg -3'
miRNA:   3'- -UCGUUCaCGa----CGGAgGCuuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 36955 0.66 0.884501
Target:  5'- gAGCGGGgGCUGCggccagcgcgggcgCCGGcGAGCGGGCc -3'
miRNA:   3'- -UCGUUCaCGACGga------------GGCU-UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 5237 0.66 0.883788
Target:  5'- uGGCuccGUGCagGUCUCCGcgggGGAGgGGGCg -3'
miRNA:   3'- -UCGuu-CACGa-CGGAGGC----UUUCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 11430 0.66 0.883788
Target:  5'- gAGCgAAGUGCUGCCgugcgaccCCGcgccAGCGG-Cu -3'
miRNA:   3'- -UCG-UUCACGACGGa-------GGCuu--UCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 29481 0.66 0.883788
Target:  5'- cGGcCGAGgcgGCacGCuCUCCGGccGCGGGCg -3'
miRNA:   3'- -UC-GUUCa--CGa-CG-GAGGCUuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 31297 0.66 0.87653
Target:  5'- cGCucGUGCUGCUgcggcgcgCCGcgGGCGG-Cg -3'
miRNA:   3'- uCGuuCACGACGGa-------GGCuuUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 22099 0.66 0.87653
Target:  5'- cGGCAGGcGC-GCCgggggCGAcAGCGGGCg -3'
miRNA:   3'- -UCGUUCaCGaCGGag---GCUuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 45714 0.66 0.87653
Target:  5'- gAGCGcGUGguacacgUGCacgCCGAAGGCGGGCc -3'
miRNA:   3'- -UCGUuCACg------ACGga-GGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 32146 0.66 0.87653
Target:  5'- gGGCGGGgGCggggGCC-CCGggGGCcaaGACg -3'
miRNA:   3'- -UCGUUCaCGa---CGGaGGCuuUCGc--CUG- -5'
6476 5' -55.5 NC_001847.1 + 124912 0.66 0.87653
Target:  5'- cGGCAGGcGC-GCCgggggCGAcAGCGGGCg -3'
miRNA:   3'- -UCGUUCaCGaCGGag---GCUuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 36074 0.66 0.87653
Target:  5'- cAGCAcgaAGagGCgGCC-CCGGGccuGGCGGGCa -3'
miRNA:   3'- -UCGU---UCa-CGaCGGaGGCUU---UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 134110 0.66 0.87653
Target:  5'- cGCucGUGCUGCUgcggcgcgCCGcgGGCGG-Cg -3'
miRNA:   3'- uCGuuCACGACGGa-------GGCuuUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 134959 0.66 0.87653
Target:  5'- gGGCGGGgGCggggGCC-CCGggGGCcaaGACg -3'
miRNA:   3'- -UCGUUCaCGa---CGGaGGCuuUCGc--CUG- -5'
6476 5' -55.5 NC_001847.1 + 73292 0.66 0.875792
Target:  5'- cGGCAGGcGCgGCCUacgCCGGcgacggcGAGuCGGACg -3'
miRNA:   3'- -UCGUUCaCGaCGGA---GGCU-------UUC-GCCUG- -5'
6476 5' -55.5 NC_001847.1 + 53382 0.66 0.869043
Target:  5'- gGGCAGGgcuaGCUGCCggcgCCGcAGGCuGAa -3'
miRNA:   3'- -UCGUUCa---CGACGGa---GGCuUUCGcCUg -5'
6476 5' -55.5 NC_001847.1 + 29120 0.66 0.869043
Target:  5'- cGCGAGcgGCUGCg--CGAGcuGGCGGACc -3'
miRNA:   3'- uCGUUCa-CGACGgagGCUU--UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 131933 0.66 0.869043
Target:  5'- cGCGAGcgGCUGCg--CGAGcuGGCGGACc -3'
miRNA:   3'- uCGUUCa-CGACGgagGCUU--UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 27280 0.66 0.869043
Target:  5'- uGUGAG-GCUGCCcgCCGGgcGAGaGGACg -3'
miRNA:   3'- uCGUUCaCGACGGa-GGCU--UUCgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.