miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 1951 0.66 0.722721
Target:  5'- cGCCGGCGCucgucCUCGccGGGCggCgCCGCc -3'
miRNA:   3'- -CGGCCGCG-----GGGUuaCCUGaaG-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 31199 0.66 0.69357
Target:  5'- cGCCgaGGCGCCgCCGcUGGuGCUggaggCCGCGg -3'
miRNA:   3'- -CGG--CCGCGG-GGUuACC-UGAag---GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 113812 0.66 0.69357
Target:  5'- cGUCuGCGCCaCAAUGGcCUUggcacCCCGCGu -3'
miRNA:   3'- -CGGcCGCGGgGUUACCuGAA-----GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 36562 1.1 0.000937
Target:  5'- cGCCGGCGCCCCAAUGGACUUCCCGCGu -3'
miRNA:   3'- -CGGCCGCGGGGUUACCUGAAGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 125521 0.66 0.719832
Target:  5'- gGCCGGCGCggCGGcGGGCgcagcuacggucgucCCCGCGg -3'
miRNA:   3'- -CGGCCGCGggGUUaCCUGaa-------------GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 56815 0.66 0.718867
Target:  5'- gGCCGGCGCgCCUGGgggcgcggggaggGGGCggCCCaGCc -3'
miRNA:   3'- -CGGCCGCG-GGGUUa------------CCUGaaGGG-CGc -5'
6477 3' -60.5 NC_001847.1 + 87575 0.66 0.713066
Target:  5'- cUCGGCGCgugcgcggCCGccGGGCUcCCCGCGc -3'
miRNA:   3'- cGGCCGCGg-------GGUuaCCUGAaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 132494 0.66 0.712097
Target:  5'- cGCCgggcgaaGGCGCCgCAAgcgGcGACggcggUCCCGCc -3'
miRNA:   3'- -CGG-------CCGCGGgGUUa--C-CUGa----AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 83470 0.66 0.703346
Target:  5'- cGUCGG-GCuCCCGGgcGGCUUCCCGUu -3'
miRNA:   3'- -CGGCCgCG-GGGUUacCUGAAGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 90851 0.66 0.69357
Target:  5'- -gCGGCGCCCCGGggccgGGGCUggugucgaggCCGgGg -3'
miRNA:   3'- cgGCCGCGGGGUUa----CCUGAag--------GGCgC- -5'
6477 3' -60.5 NC_001847.1 + 114686 0.66 0.703346
Target:  5'- aGCCGccGCGgCCUGcUGGACgccUUCCGCGc -3'
miRNA:   3'- -CGGC--CGCgGGGUuACCUGa--AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 120714 0.66 0.703346
Target:  5'- cGCuCGGCGCCaaaCAGcGGAgc-CCCGCa -3'
miRNA:   3'- -CG-GCCGCGGg--GUUaCCUgaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 57333 0.66 0.722721
Target:  5'- gGCCGGCacgcGCCgcgccacguccuCCAGacauccgcgcUGGGCcUCCCGCa -3'
miRNA:   3'- -CGGCCG----CGG------------GGUU----------ACCUGaAGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 9750 0.66 0.703346
Target:  5'- gGCgGGCccuGCCCCg--GGGCg-CCCGCu -3'
miRNA:   3'- -CGgCCG---CGGGGuuaCCUGaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 33656 0.66 0.722721
Target:  5'- aGCCGGCGCCUCGGUcG-CUagcgCgCCGCc -3'
miRNA:   3'- -CGGCCGCGGGGUUAcCuGAa---G-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 12224 0.66 0.709186
Target:  5'- uGCgCGGCGCgcgcacaCCCGAacggcgaGGGCUgcgaugcccaccagUCCCGCGa -3'
miRNA:   3'- -CG-GCCGCG-------GGGUUa------CCUGA--------------AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 42153 0.66 0.69357
Target:  5'- cCCGGCGCC----UGGACguugCCgGCGg -3'
miRNA:   3'- cGGCCGCGGgguuACCUGaa--GGgCGC- -5'
6477 3' -60.5 NC_001847.1 + 29008 0.66 0.69357
Target:  5'- gGCCGGCGCCggcggCAGcGGcg--CCCGCGc -3'
miRNA:   3'- -CGGCCGCGGg----GUUaCCugaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 31437 0.66 0.722721
Target:  5'- gGCCGGCggccgcggcgGCCCCGGcgcGGGCcgccgCCgCGCGu -3'
miRNA:   3'- -CGGCCG----------CGGGGUUa--CCUGaa---GG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 53543 0.66 0.713066
Target:  5'- cGCCGGCGgCCUcGUGcacaacGACgcUCCCGUa -3'
miRNA:   3'- -CGGCCGCgGGGuUAC------CUGa-AGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.