miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 5' -53.5 NC_001847.1 + 133733 0.66 0.940639
Target:  5'- gGGCGCg---GGGCC-GCGUGCCu--- -3'
miRNA:   3'- -UCGCGaucuUCUGGuCGCACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 32827 0.66 0.940639
Target:  5'- gAGCGCgc-GAGGCCcGCGUGgCCGc-- -3'
miRNA:   3'- -UCGCGaucUUCUGGuCGCAC-GGUaau -5'
6477 5' -53.5 NC_001847.1 + 80026 0.66 0.940639
Target:  5'- uGGCGCggGGggGGUCGGCGUcaucGCCGc-- -3'
miRNA:   3'- -UCGCGa-UCuuCUGGUCGCA----CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 97222 0.66 0.940639
Target:  5'- gGGCGCgAGucgGGACCaAGCGUGUUGUc- -3'
miRNA:   3'- -UCGCGaUCu--UCUGG-UCGCACGGUAau -5'
6477 5' -53.5 NC_001847.1 + 22025 0.66 0.935624
Target:  5'- cGGCGaccgUGGAAGcGCaCAGCGUGCgCAUg- -3'
miRNA:   3'- -UCGCg---AUCUUC-UG-GUCGCACG-GUAau -5'
6477 5' -53.5 NC_001847.1 + 64055 0.66 0.935624
Target:  5'- gGGCGCUGGAcgcccuGGCCGGCc-GCCu--- -3'
miRNA:   3'- -UCGCGAUCUu-----CUGGUCGcaCGGuaau -5'
6477 5' -53.5 NC_001847.1 + 107247 0.66 0.935624
Target:  5'- aAGCGCggccGGGCCGGCGaccucGCCAUc- -3'
miRNA:   3'- -UCGCGaucuUCUGGUCGCa----CGGUAau -5'
6477 5' -53.5 NC_001847.1 + 69298 0.66 0.935624
Target:  5'- gGGCGUgcgGGcGGACCGGC-UGCCu--- -3'
miRNA:   3'- -UCGCGa--UCuUCUGGUCGcACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 30449 0.66 0.935624
Target:  5'- cGGCGCUGGGcaACCGGC-UGCUg--- -3'
miRNA:   3'- -UCGCGAUCUucUGGUCGcACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 133262 0.66 0.935624
Target:  5'- cGGCGCUGGGcaACCGGC-UGCUg--- -3'
miRNA:   3'- -UCGCGAUCUucUGGUCGcACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 132157 0.66 0.930348
Target:  5'- cGCGCaGGGugGGGCCGGCGaacauaaaaUGCCGg-- -3'
miRNA:   3'- uCGCGaUCU--UCUGGUCGC---------ACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 14118 0.66 0.930348
Target:  5'- uGGCGCcGGAAGcgaGCgGGCGUGUCu--- -3'
miRNA:   3'- -UCGCGaUCUUC---UGgUCGCACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 32955 0.66 0.930348
Target:  5'- gGGgGCggAGGAGGCCGGgGagGCCAg-- -3'
miRNA:   3'- -UCgCGa-UCUUCUGGUCgCa-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 60499 0.66 0.930348
Target:  5'- uGCGCgcGcGGGCCGGCGgGCCu--- -3'
miRNA:   3'- uCGCGauCuUCUGGUCGCaCGGuaau -5'
6477 5' -53.5 NC_001847.1 + 128201 0.66 0.924809
Target:  5'- gGGCGgaGGggGACCGcggaagcacuGCGgGCCAg-- -3'
miRNA:   3'- -UCGCgaUCuuCUGGU----------CGCaCGGUaau -5'
6477 5' -53.5 NC_001847.1 + 93744 0.66 0.924809
Target:  5'- cGGCaGCUGGAGGccgcgcggcuGCCGGCGgcgGCCc--- -3'
miRNA:   3'- -UCG-CGAUCUUC----------UGGUCGCa--CGGuaau -5'
6477 5' -53.5 NC_001847.1 + 125448 0.66 0.924809
Target:  5'- gGGCGCguccggGGAGGGCgGGCuUGCCc--- -3'
miRNA:   3'- -UCGCGa-----UCUUCUGgUCGcACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 50529 0.66 0.924809
Target:  5'- cGCGCUGGAccaccuGGcGCUGGCGUGCgGg-- -3'
miRNA:   3'- uCGCGAUCU------UC-UGGUCGCACGgUaau -5'
6477 5' -53.5 NC_001847.1 + 96681 0.66 0.924809
Target:  5'- cGUGCgcGggGGCCGGCGgguacgcgucGCCAa-- -3'
miRNA:   3'- uCGCGauCuuCUGGUCGCa---------CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 25388 0.66 0.924809
Target:  5'- gGGCGgaGGggGACCGcggaagcacuGCGgGCCAg-- -3'
miRNA:   3'- -UCGCgaUCuuCUGGU----------CGCaCGGUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.