miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 102635 0.66 0.880204
Target:  5'- -uAUAUACgcgcgUCUcggggugaCGCGCCGGgaGCGGCc -3'
miRNA:   3'- uuUAUAUG-----AGG--------GCGCGGCCgaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 66721 0.66 0.880204
Target:  5'- -----cGCUUCgaCGUGCCGGUUGgCGACc -3'
miRNA:   3'- uuuauaUGAGG--GCGCGGCCGAC-GCUG- -5'
6478 3' -55.9 NC_001847.1 + 98184 0.66 0.880204
Target:  5'- -----gGCgCCCGCGCUGGCcGCaGCc -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCCGaCGcUG- -5'
6478 3' -55.9 NC_001847.1 + 93620 0.66 0.880204
Target:  5'- ---gGUGCU-CCG-GCCGGC-GCGGCc -3'
miRNA:   3'- uuuaUAUGAgGGCgCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 13433 0.66 0.880204
Target:  5'- -----aGCggggCCUGCGCUGGCUGUa-- -3'
miRNA:   3'- uuuauaUGa---GGGCGCGGCCGACGcug -5'
6478 3' -55.9 NC_001847.1 + 115678 0.66 0.880204
Target:  5'- cGGGUGaGCggCUGCgcgggggcgagaGCCGGCUGCGGCc -3'
miRNA:   3'- -UUUAUaUGagGGCG------------CGGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 81710 0.66 0.880204
Target:  5'- -----gGCgCgCGCGCCGGUggaaGCGGCa -3'
miRNA:   3'- uuuauaUGaGgGCGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 102106 0.66 0.880204
Target:  5'- cAAUAaACUCCUGCGCCGcGUccGCGcCu -3'
miRNA:   3'- uUUAUaUGAGGGCGCGGC-CGa-CGCuG- -5'
6478 3' -55.9 NC_001847.1 + 59498 0.66 0.880204
Target:  5'- -----aACgCCCGCGCCuccGGCUcCGGCa -3'
miRNA:   3'- uuuauaUGaGGGCGCGG---CCGAcGCUG- -5'
6478 3' -55.9 NC_001847.1 + 10508 0.66 0.880204
Target:  5'- -----gGC-CCCGCGCUG-CUGCGGg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCcGACGCUg -5'
6478 3' -55.9 NC_001847.1 + 5666 0.66 0.872848
Target:  5'- ---gAUGCgcgCCguCGCGCgCGGCgGCGGCc -3'
miRNA:   3'- uuuaUAUGa--GG--GCGCG-GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 45785 0.66 0.872848
Target:  5'- -----cGCgcaCgGCGCCGGCgucgGCGGCc -3'
miRNA:   3'- uuuauaUGag-GgCGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 87696 0.66 0.872848
Target:  5'- ----cUGCUgCgGCGCCgcGGCgGCGGCg -3'
miRNA:   3'- uuuauAUGAgGgCGCGG--CCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 111073 0.66 0.872848
Target:  5'- -----cGCUgCCGCGggccugggcCCGGCUGCG-Cg -3'
miRNA:   3'- uuuauaUGAgGGCGC---------GGCCGACGCuG- -5'
6478 3' -55.9 NC_001847.1 + 73814 0.66 0.872848
Target:  5'- ---cGUGgUCgCCGCGCugcagCGGCUGCG-Cg -3'
miRNA:   3'- uuuaUAUgAG-GGCGCG-----GCCGACGCuG- -5'
6478 3' -55.9 NC_001847.1 + 50838 0.66 0.872848
Target:  5'- -----cGCUgCCCGCGCCGGgggGCG-Cu -3'
miRNA:   3'- uuuauaUGA-GGGCGCGGCCga-CGCuG- -5'
6478 3' -55.9 NC_001847.1 + 130735 0.66 0.872848
Target:  5'- -----cGCUgCCGcCGUCGGCgucgacgGCGGCg -3'
miRNA:   3'- uuuauaUGAgGGC-GCGGCCGa------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 115105 0.66 0.872848
Target:  5'- --------gCCCGCGCCcagGGCgGCGGCc -3'
miRNA:   3'- uuuauaugaGGGCGCGG---CCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 119926 0.66 0.8721
Target:  5'- ---cGUACUUCgucuauaCGCGCCGGCgcggUGCGGg -3'
miRNA:   3'- uuuaUAUGAGG-------GCGCGGCCG----ACGCUg -5'
6478 3' -55.9 NC_001847.1 + 94157 0.66 0.865266
Target:  5'- -----gACaUCUCGCGgCGGCUGCugGGCg -3'
miRNA:   3'- uuuauaUG-AGGGCGCgGCCGACG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.