miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 134871 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 21873 0.7 0.549581
Target:  5'- gGGGGCUgCGGCGC--GCUgCCgAGGCc-- -3'
miRNA:   3'- -CCCCGA-GCCGCGuuUGA-GG-UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 95680 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 14452 0.69 0.580099
Target:  5'- cGGGGUgcgCGGcCGCGGccucuggguCUCCGGGCUc- -3'
miRNA:   3'- -CCCCGa--GCC-GCGUUu--------GAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 3813 0.69 0.631623
Target:  5'- cGGGCggcggCGGCGC--GCUgCCGGGCc-- -3'
miRNA:   3'- cCCCGa----GCCGCGuuUGA-GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 31377 0.69 0.631623
Target:  5'- cGGGuGC-CGGCGCAGucguCcCCGGGCg-- -3'
miRNA:   3'- -CCC-CGaGCCGCGUUu---GaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 123482 0.69 0.580099
Target:  5'- cGGGCUCGGCuggggccgccGCAAGCggggCCGGGg--- -3'
miRNA:   3'- cCCCGAGCCG----------CGUUUGa---GGUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 95761 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 127182 0.69 0.604767
Target:  5'- aGGGCccuaaaaacccgcaUGGCGCGAACUCCGGcGCg-- -3'
miRNA:   3'- cCCCGa-------------GCCGCGUUUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 6439 0.69 0.610957
Target:  5'- aGGGGUuaggCGGCGCGGcgacggcguACguggCCAGGCa-- -3'
miRNA:   3'- -CCCCGa---GCCGCGUU---------UGa---GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 75145 0.69 0.621286
Target:  5'- cGGGGC-CGGCGguG-CUCUcGGUUAGg -3'
miRNA:   3'- -CCCCGaGCCGCguUuGAGGuCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 103953 0.69 0.621286
Target:  5'- cGGcGGCgccUCGGCGCGcGGCUCC-GGCa-- -3'
miRNA:   3'- -CC-CCG---AGCCGCGU-UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 52395 0.69 0.621286
Target:  5'- -cGGCcgucuaCGGCGCcguGCUCCAGGCg-- -3'
miRNA:   3'- ccCCGa-----GCCGCGuu-UGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 70374 0.69 0.631623
Target:  5'- gGGGGCgccggGGCGCGAGCUCgCGcuGGCc-- -3'
miRNA:   3'- -CCCCGag---CCGCGUUUGAG-GU--CCGauu -5'
6479 3' -57.8 NC_001847.1 + 106769 0.69 0.631623
Target:  5'- gGGGGCgccgucucCGGCGCGAgggcgccggggGC-CCGGGCg-- -3'
miRNA:   3'- -CCCCGa-------GCCGCGUU-----------UGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 95653 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 60245 0.69 0.600645
Target:  5'- aGGGCUagcaCGGCGCcGACUUcgCAGGCg-- -3'
miRNA:   3'- cCCCGA----GCCGCGuUUGAG--GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 119523 0.69 0.590356
Target:  5'- aGGGGCggCGGcCGCGGcCggCAGGCUGGg -3'
miRNA:   3'- -CCCCGa-GCC-GCGUUuGagGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 29570 0.69 0.590356
Target:  5'- gGGGGCgcCGGCGCcGGCgccgccgcgCCGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuUUGa--------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 123561 0.69 0.580099
Target:  5'- cGGGGCUUGGgccggggccgcCGCGAGCggggccggaCCGGGCUu- -3'
miRNA:   3'- -CCCCGAGCC-----------GCGUUUGa--------GGUCCGAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.