miRNA display CGI


Results 1 - 20 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 135067 0.73 0.101742
Target:  5'- aGCCCagaGCgGGCCCgGGCCCgCCGCGcCGa -3'
miRNA:   3'- -CGGGg--CGgCUGGG-CCGGG-GGCGCcGC- -5'
6480 5' -70.3 NC_001847.1 + 135000 0.72 0.11737
Target:  5'- gGCCCC-CCGGCCgGgGCCcgaggCCCGCgGGCGg -3'
miRNA:   3'- -CGGGGcGGCUGGgC-CGG-----GGGCG-CCGC- -5'
6480 5' -70.3 NC_001847.1 + 134863 0.74 0.081935
Target:  5'- cGCCCgCGCgGGCUcggCGGCCCCCG-GGCu -3'
miRNA:   3'- -CGGG-GCGgCUGG---GCCGGGGGCgCCGc -5'
6480 5' -70.3 NC_001847.1 + 134729 0.7 0.166678
Target:  5'- cCCCCGCCcGCCCcgGGCCCUCGgucuCGGuCGg -3'
miRNA:   3'- cGGGGCGGcUGGG--CCGGGGGC----GCC-GC- -5'
6480 5' -70.3 NC_001847.1 + 134665 0.67 0.266444
Target:  5'- cGCCCCGCCGcCgCCGcugcuGCCgCCGCcGCc -3'
miRNA:   3'- -CGGGGCGGCuG-GGC-----CGGgGGCGcCGc -5'
6480 5' -70.3 NC_001847.1 + 134557 0.66 0.315597
Target:  5'- gGCCgCggaggGCCagGACCCGGCgCCggagaCGCGGCGc -3'
miRNA:   3'- -CGGgG-----CGG--CUGGGCCGgGG-----GCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 134379 0.69 0.181426
Target:  5'- gGCgCCGCCGGCggcgggCCGGCCucgcccuaggggggCCCGCGGg- -3'
miRNA:   3'- -CGgGGCGGCUG------GGCCGG--------------GGGCGCCgc -5'
6480 5' -70.3 NC_001847.1 + 134230 0.68 0.213931
Target:  5'- uCCCggCGCCGGCgggcggcggCCGGCggCCGCGGCGg -3'
miRNA:   3'- cGGG--GCGGCUG---------GGCCGggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 134177 0.83 0.017885
Target:  5'- aGCCCCGCCGGCCCGGgugccggcgcagucgUCCCCG-GGCGc -3'
miRNA:   3'- -CGGGGCGGCUGGGCC---------------GGGGGCgCCGC- -5'
6480 5' -70.3 NC_001847.1 + 134020 0.67 0.266444
Target:  5'- cGCCgCCGCUgGugCUGGaggCCGCGGCGg -3'
miRNA:   3'- -CGG-GGCGG-CugGGCCgggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133949 0.66 0.328909
Target:  5'- gGCgCCCGaCGAgcugCCGGCCgCgGCGGUGg -3'
miRNA:   3'- -CG-GGGCgGCUg---GGCCGGgGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133898 0.67 0.272233
Target:  5'- cGCgCCGCUGcggccgguguACCUGGCCUgCggGCGGCGc -3'
miRNA:   3'- -CGgGGCGGC----------UGGGCCGGGgG--CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133730 0.69 0.204557
Target:  5'- cGCCaCCGCgGuGCCCGuGCCgCCGC-GCGa -3'
miRNA:   3'- -CGG-GGCGgC-UGGGC-CGGgGGCGcCGC- -5'
6480 5' -70.3 NC_001847.1 + 133665 0.72 0.111927
Target:  5'- gGCgCCGCCGcUgCGGCUCugCCGCGGCGg -3'
miRNA:   3'- -CGgGGCGGCuGgGCCGGG--GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133578 0.72 0.114618
Target:  5'- gGCgCgCGCCGugCUGG-CCUCGCGGCGc -3'
miRNA:   3'- -CGgG-GCGGCugGGCCgGGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133543 0.66 0.335719
Target:  5'- cGCagugCGCCGcGCgCUGGCCCgaGCGGCGc -3'
miRNA:   3'- -CGgg--GCGGC-UG-GGCCGGGggCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133478 0.7 0.166678
Target:  5'- gGCCgCGCgaCGGCCCGGCCgUCG-GGCa -3'
miRNA:   3'- -CGGgGCG--GCUGGGCCGGgGGCgCCGc -5'
6480 5' -70.3 NC_001847.1 + 133359 0.7 0.158795
Target:  5'- cGUgCUGCUgcucucgacgcggGACCUGGCCuUCCGCGGCGc -3'
miRNA:   3'- -CGgGGCGG-------------CUGGGCCGG-GGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133208 0.72 0.125702
Target:  5'- aGCgCCGgCGGCCCGaguggccGCCgCgCCGCGGCGg -3'
miRNA:   3'- -CGgGGCgGCUGGGC-------CGG-G-GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133163 0.66 0.335719
Target:  5'- -aCCCGCUG-CCCggggaGGCgCUgGCGGCGc -3'
miRNA:   3'- cgGGGCGGCuGGG-----CCGgGGgCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.