miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 134153 0.66 0.392917
Target:  5'- uGGGGgcagaaggUGCGuGcGGGCCgGCGCauagacgcccGGCGCa -3'
miRNA:   3'- -CCCCa-------GCGUcC-CCCGGgCGCG----------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 123135 0.66 0.400767
Target:  5'- aGGGG-CGCuGGaacGGGUgCGUGCGGUa- -3'
miRNA:   3'- -CCCCaGCGuCC---CCCGgGCGCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 91876 0.66 0.407118
Target:  5'- cGGcGUCGCAGcaggugccccccGGGCgCCGCGCcgcccGCGCg -3'
miRNA:   3'- cCC-CAGCGUCc-----------CCCG-GGCGCGc----CGCG- -5'
6482 5' -67.7 NC_001847.1 + 43658 0.66 0.416762
Target:  5'- aGGG-CuCGGGuGGCCCGCcGCaGGUGCu -3'
miRNA:   3'- cCCCaGcGUCCcCCGGGCG-CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 35931 0.66 0.37752
Target:  5'- cGGcGGUCGCGcGcgcuugcgccuGGGCgCUGCugGCGGCGCu -3'
miRNA:   3'- -CC-CCAGCGUcC-----------CCCG-GGCG--CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 97005 0.66 0.391359
Target:  5'- cGGGUcggcggcgcuggcCGCGGGGGGCa-GCGCGuccucguagucuaGCGUc -3'
miRNA:   3'- cCCCA-------------GCGUCCCCCGggCGCGC-------------CGCG- -5'
6482 5' -67.7 NC_001847.1 + 7427 0.66 0.400767
Target:  5'- gGGGGggGgGGGGGGCguacUUGCaGCGGCccGCa -3'
miRNA:   3'- -CCCCagCgUCCCCCG----GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 33842 0.66 0.416762
Target:  5'- uGGGaGUCGCGGcGGGaGagaCCGCG-GGCu- -3'
miRNA:   3'- -CCC-CAGCGUC-CCC-Cg--GGCGCgCCGcg -5'
6482 5' -67.7 NC_001847.1 + 15473 0.66 0.392137
Target:  5'- cGGGUCcUGGGGGGCcgccguugcccucCCGCcCGGCuGCc -3'
miRNA:   3'- cCCCAGcGUCCCCCG-------------GGCGcGCCG-CG- -5'
6482 5' -67.7 NC_001847.1 + 74433 0.66 0.416762
Target:  5'- uGGaGGUCGUGGcGGcGCacgaCGcCGUGGCGCu -3'
miRNA:   3'- -CC-CCAGCGUCcCC-CGg---GC-GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3949 0.66 0.400767
Target:  5'- -cGG-CGgGGGGGGCgCCGUcuccgGCGGCGn -3'
miRNA:   3'- ccCCaGCgUCCCCCG-GGCG-----CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 102459 0.66 0.392917
Target:  5'- cGGcGcCGCacagcucgAGcGGGCCCGCGCcgccGGCGCc -3'
miRNA:   3'- cCC-CaGCG--------UCcCCCGGGCGCG----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10213 0.66 0.400767
Target:  5'- cGGGcC-CAGGGcGcGCCCGCugucgccccCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCC-C-CGGGCGc--------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14194 0.66 0.406321
Target:  5'- aGGGGcUgGCGGcGGGGCUgGCggucaggccggccgGgGGCGUg -3'
miRNA:   3'- -CCCC-AgCGUC-CCCCGGgCG--------------CgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 51587 0.66 0.408715
Target:  5'- cGGGGcagcCGuCGGGaGGGCagugcuccaccCCgGgGCGGCGCa -3'
miRNA:   3'- -CCCCa---GC-GUCC-CCCG-----------GG-CgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 2299 0.66 0.414338
Target:  5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3'
miRNA:   3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 65490 0.66 0.37752
Target:  5'- uGGcGGUCcauggcgcgguGUGGGGcGGCgCGCGCaGUGCg -3'
miRNA:   3'- -CC-CCAG-----------CGUCCC-CCGgGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 94870 0.66 0.37752
Target:  5'- uGGGGggCGCGGGcaGCucgcaaauCCGCGCuucGGCGCu -3'
miRNA:   3'- -CCCCa-GCGUCCccCG--------GGCGCG---CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 101487 0.66 0.385167
Target:  5'- ----gCGCGGGccgcGGCCaCGCGCGcGCGCg -3'
miRNA:   3'- ccccaGCGUCCc---CCGG-GCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 3294 0.66 0.385167
Target:  5'- -cGGcgCGCAGcucGGCgaGCGCGGCGCg -3'
miRNA:   3'- ccCCa-GCGUCcc-CCGggCGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.