miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 28081 0.66 0.416762
Target:  5'- cGGGGacugagGCGGGGGGCg---GCGGUGCc -3'
miRNA:   3'- -CCCCag----CGUCCCCCGggcgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 7427 0.66 0.400767
Target:  5'- gGGGGggGgGGGGGGCguacUUGCaGCGGCccGCa -3'
miRNA:   3'- -CCCCagCgUCCCCCG----GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 123135 0.66 0.400767
Target:  5'- aGGGG-CGCuGGaacGGGUgCGUGCGGUa- -3'
miRNA:   3'- -CCCCaGCGuCC---CCCGgGCGCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 32316 1.12 0.000162
Target:  5'- cGGGGUCGCAGGGGGCCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGUCCCCCGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 2299 0.66 0.414338
Target:  5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3'
miRNA:   3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 51530 0.66 0.408715
Target:  5'- cGGcagGCGGGGGcggcGCCCagGCGuCGGCGCa -3'
miRNA:   3'- cCCcagCGUCCCC----CGGG--CGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 51587 0.66 0.408715
Target:  5'- cGGGGcagcCGuCGGGaGGGCagugcuccaccCCgGgGCGGCGCa -3'
miRNA:   3'- -CCCCa---GC-GUCC-CCCG-----------GG-CgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 28418 0.66 0.408715
Target:  5'- cGGGcgCGCAaccGGcGCCCGCgcuggcuacgccGCGGCGCc -3'
miRNA:   3'- cCCCa-GCGUcc-CC-CGGGCG------------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14194 0.66 0.406321
Target:  5'- aGGGGcUgGCGGcGGGGCUgGCggucaggccggccgGgGGCGUg -3'
miRNA:   3'- -CCCC-AgCGUC-CCCCGGgCG--------------CgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16577 0.66 0.400767
Target:  5'- cGGGa--CAGcGGGGUCgGgGCGGCGUg -3'
miRNA:   3'- cCCCagcGUC-CCCCGGgCgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16641 0.66 0.400767
Target:  5'- cGGGGUUGCucuuGGCgaaCGUgGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGucccCCGg--GCG-CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 91876 0.66 0.407118
Target:  5'- cGGcGUCGCAGcaggugccccccGGGCgCCGCGCcgcccGCGCg -3'
miRNA:   3'- cCC-CAGCGUCc-----------CCCG-GGCGCGc----CGCG- -5'
6482 5' -67.7 NC_001847.1 + 74433 0.66 0.416762
Target:  5'- uGGaGGUCGUGGcGGcGCacgaCGcCGUGGCGCu -3'
miRNA:   3'- -CC-CCAGCGUCcCC-CGg---GC-GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10213 0.66 0.400767
Target:  5'- cGGGcC-CAGGGcGcGCCCGCugucgccccCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCC-C-CGGGCGc--------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33842 0.66 0.416762
Target:  5'- uGGGaGUCGCGGcGGGaGagaCCGCG-GGCu- -3'
miRNA:   3'- -CCC-CAGCGUC-CCC-Cg--GGCGCgCCGcg -5'
6482 5' -67.7 NC_001847.1 + 75469 0.66 0.407916
Target:  5'- cGGGGg---GGaGGGGCCagaGCGCacgggcgGGCGCg -3'
miRNA:   3'- -CCCCagcgUC-CCCCGGg--CGCG-------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 92258 0.66 0.400767
Target:  5'- --aGUCGCAaaGGcGCCCacuaGCGUGGCGCg -3'
miRNA:   3'- cccCAGCGUccCC-CGGG----CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3949 0.66 0.400767
Target:  5'- -cGG-CGgGGGGGGCgCCGUcuccgGCGGCGn -3'
miRNA:   3'- ccCCaGCgUCCCCCG-GGCG-----CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 43658 0.66 0.416762
Target:  5'- aGGG-CuCGGGuGGCCCGCcGCaGGUGCu -3'
miRNA:   3'- cCCCaGcGUCCcCCGGGCG-CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 85069 0.66 0.408715
Target:  5'- -uGGcCGCGcccGGGUCCGCGCcGCGCg -3'
miRNA:   3'- ccCCaGCGUcc-CCCGGGCGCGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.