miRNA display CGI


Results 41 - 60 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 129757 0.76 0.079538
Target:  5'- cCugUGCCGCCgGCcgCUCGGaCCGCCGg -3'
miRNA:   3'- -GugACGGCGGgCGa-GGGCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 129593 0.7 0.199084
Target:  5'- cCGCUGCCG-CUGCUgCCGcCgCCGCCGg -3'
miRNA:   3'- -GUGACGGCgGGCGAgGGCcG-GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 129454 0.66 0.353148
Target:  5'- aACUGCCggGUCUggGCggcCCCGGCCgGCCc -3'
miRNA:   3'- gUGACGG--CGGG--CGa--GGGCCGGgCGGc -5'
6483 5' -67.8 NC_001847.1 + 129323 0.68 0.279303
Target:  5'- gGgUGCUGCaCGCaCCCGGCgCGCCa -3'
miRNA:   3'- gUgACGGCGgGCGaGGGCCGgGCGGc -5'
6483 5' -67.8 NC_001847.1 + 128986 0.66 0.383221
Target:  5'- aAUUGCCGCgC-CUCCCuGCUCGCUc -3'
miRNA:   3'- gUGACGGCGgGcGAGGGcCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 128779 0.7 0.213338
Target:  5'- uGCUGCCgcagcggcuacGCCCGCggCgCGGUugCCGCCGg -3'
miRNA:   3'- gUGACGG-----------CGGGCGa-GgGCCG--GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 128446 0.7 0.19452
Target:  5'- gCGCUcgGCCcuGCgCGCgcgCCCGGCCgGCCGc -3'
miRNA:   3'- -GUGA--CGG--CGgGCGa--GGGCCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 128190 0.72 0.139694
Target:  5'- gCGCcGCCGCgaccCCGCgCCUGGCCCGUCu -3'
miRNA:   3'- -GUGaCGGCG----GGCGaGGGCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 128141 0.72 0.153725
Target:  5'- gCGCgGCCGCUCGUcgcguuuuaUCUgcugggCGGCCCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCG---------AGG------GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 127409 0.66 0.360507
Target:  5'- gGCcGCCGCcuCCGCgCCCGcGCCCugcGCCu -3'
miRNA:   3'- gUGaCGGCG--GGCGaGGGC-CGGG---CGGc -5'
6483 5' -67.8 NC_001847.1 + 126679 0.73 0.136374
Target:  5'- aGC-GCCGCCCcCggCCCGGCgCCGCCu -3'
miRNA:   3'- gUGaCGGCGGGcGa-GGGCCG-GGCGGc -5'
6483 5' -67.8 NC_001847.1 + 126527 0.67 0.317961
Target:  5'- gCGCUccuCCcCCCGCcCCCGGCCgagCGCCGc -3'
miRNA:   3'- -GUGAc--GGcGGGCGaGGGCCGG---GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 125630 0.72 0.150102
Target:  5'- gCGC-GCCGCCCGCUCggcuCgGGUCCGCuCGu -3'
miRNA:   3'- -GUGaCGGCGGGCGAG----GgCCGGGCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 125017 0.67 0.324782
Target:  5'- cUACgGCCggGCCCGCUCgCCGcGaaggcggcuuucCCCGCCGc -3'
miRNA:   3'- -GUGaCGG--CGGGCGAG-GGC-C------------GGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 124871 0.67 0.304643
Target:  5'- uCGCUGCCGCUCacgucgcacucgGCUccgaaaagcgggCCCGGCaggcgCGCCGg -3'
miRNA:   3'- -GUGACGGCGGG------------CGA------------GGGCCGg----GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 124570 0.73 0.136374
Target:  5'- gCGCggggggGCCGCCgGCgccgggCCCGGCgCCgGCCGg -3'
miRNA:   3'- -GUGa-----CGGCGGgCGa-----GGGCCG-GG-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 124260 0.74 0.113428
Target:  5'- aGCUGCCGCagGCggucugccugggcgCCCGcGCCCGCCGc -3'
miRNA:   3'- gUGACGGCGggCGa-------------GGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 123791 0.7 0.188724
Target:  5'- gCGCgGCCGCgcguacgagugcucCCGCUCCgGcgccagccGCCCGCCGg -3'
miRNA:   3'- -GUGaCGGCG--------------GGCGAGGgC--------CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 123471 0.67 0.311248
Target:  5'- gACgGCCGCCgCGggCUCGGCuggggCCGCCGc -3'
miRNA:   3'- gUGaCGGCGG-GCgaGGGCCG-----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 123287 0.67 0.338749
Target:  5'- aCGCUcgcGCCGCCCGCagggcggcgCCagaGGCCuuaCGCCa -3'
miRNA:   3'- -GUGA---CGGCGGGCGa--------GGg--CCGG---GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.