miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 132594 0.72 0.132944
Target:  5'- ---aGGGCcGCCCCGGcCCGGCggcgggagcgCCGCCg -3'
miRNA:   3'- cagaCCCGcCGGGGCC-GGCCG----------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 29781 0.72 0.132944
Target:  5'- ---aGGGCcGCCCCGGcCCGGCggcgggagcgCCGCCg -3'
miRNA:   3'- cagaCCCGcCGGGGCC-GGCCG----------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 52745 0.72 0.132944
Target:  5'- --aUGGGC-GUCCCGGacaagCGGCCCGCCc -3'
miRNA:   3'- cagACCCGcCGGGGCCg----GCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 52458 0.72 0.1352
Target:  5'- -aCUGGGCGGCCCUGGUgGaggacgaguucuucGCCCAg- -3'
miRNA:   3'- caGACCCGCCGGGGCCGgC--------------CGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 102238 0.72 0.136178
Target:  5'- cGUCc--GCGGCCCCGgcuuccccGCCGGCCC-CCg -3'
miRNA:   3'- -CAGaccCGCCGGGGC--------CGGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 105153 0.72 0.136178
Target:  5'- ---aGcGGCGGCuCCCGccgcGCCGGCCCgGCCg -3'
miRNA:   3'- cagaC-CCGCCG-GGGC----CGGCCGGG-UGG- -5'
6485 5' -68.2 NC_001847.1 + 2340 0.72 0.136178
Target:  5'- ---aGcGGCGGCuCCCGccgcGCCGGCCCgGCCg -3'
miRNA:   3'- cagaC-CCGCCG-GGGC----CGGCCGGG-UGG- -5'
6485 5' -68.2 NC_001847.1 + 83615 0.72 0.139485
Target:  5'- -cCUGGGCGccGCCCCcgccuGCCGGCgCCGCa -3'
miRNA:   3'- caGACCCGC--CGGGGc----CGGCCG-GGUGg -5'
6485 5' -68.2 NC_001847.1 + 103559 0.72 0.142865
Target:  5'- -----cGCgGGCCCCccuagggcgaGGCCGGCCCGCCg -3'
miRNA:   3'- cagaccCG-CCGGGG----------CCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 746 0.72 0.142865
Target:  5'- -----cGCgGGCCCCccuagggcgaGGCCGGCCCGCCg -3'
miRNA:   3'- cagaccCG-CCGGGG----------CCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 482 0.72 0.142865
Target:  5'- cGUCaUGGGUGcccgcGCCuCCGcgccugcuGCCGGCCCGCCc -3'
miRNA:   3'- -CAG-ACCCGC-----CGG-GGC--------CGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 103776 0.72 0.14597
Target:  5'- -aCUGcGcCGGCaCCCGGCCGGCggggcuuCCGCCg -3'
miRNA:   3'- caGACcC-GCCG-GGGCCGGCCG-------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 22516 0.72 0.146319
Target:  5'- ---gGcGGCGGgCCgGGCCGGUCUGCCg -3'
miRNA:   3'- cagaC-CCGCCgGGgCCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 63811 0.72 0.146319
Target:  5'- -gUUGGGUGGCCCUGGCa-GCuCCACg -3'
miRNA:   3'- caGACCCGCCGGGGCCGgcCG-GGUGg -5'
6485 5' -68.2 NC_001847.1 + 94063 0.72 0.146319
Target:  5'- -gCUGGGcCGGCaCCaguacguuugcgCGGCCaGCCCGCCc -3'
miRNA:   3'- caGACCC-GCCG-GG------------GCCGGcCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 125329 0.72 0.146319
Target:  5'- ---gGcGGCGGgCCgGGCCGGUCUGCCg -3'
miRNA:   3'- cagaC-CCGCCgGGgCCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 11583 0.72 0.146319
Target:  5'- ---cGcGGCGGCCCCGGCCcaaGCCCcguucgcagcgGCCu -3'
miRNA:   3'- cagaC-CCGCCGGGGCCGGc--CGGG-----------UGG- -5'
6485 5' -68.2 NC_001847.1 + 17065 0.72 0.146319
Target:  5'- ---cGGGCGGUaaaCGGCCGGCgUGCCa -3'
miRNA:   3'- cagaCCCGCCGgg-GCCGGCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 81263 0.72 0.148783
Target:  5'- ---cGGGgGGCCCgcccgcccccgcggCGGUCGGCgCCGCCa -3'
miRNA:   3'- cagaCCCgCCGGG--------------GCCGGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 8344 0.71 0.153458
Target:  5'- uUCUGGGacuGGCgCCaaGCCGGCCCAUg -3'
miRNA:   3'- cAGACCCg--CCG-GGgcCGGCCGGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.