miRNA display CGI


Results 41 - 60 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 14112 0.66 0.999694
Target:  5'- gCCaGUUGGCGCcGGAA-GCGAgcgGGCg -3'
miRNA:   3'- gGGgCGACCGCGuUUUUaUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 14319 0.67 0.998598
Target:  5'- cUCCCGCUGcucGCGguGGGGccggGCGugGUGGCg -3'
miRNA:   3'- -GGGGCGAC---CGCguUUUUa---UGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 14584 0.68 0.99652
Target:  5'- gCCCUGagucuauugGGCGCGGAuggGCGAUGGa -3'
miRNA:   3'- -GGGGCga-------CCGCGUUUuuaUGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 14765 0.66 0.999389
Target:  5'- gCCCGC-GGCGUGGuAGcGCAGcAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 14943 0.66 0.999748
Target:  5'- -aCCGCUGGCuGCuguGGUucauggacgccuCGAUGGCa -3'
miRNA:   3'- ggGGCGACCG-CGuuuUUAu-----------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 15213 0.68 0.997912
Target:  5'- aCCgCGCcGGCGCGuauagacGAAGUACGcgccGGCg -3'
miRNA:   3'- -GGgGCGaCCGCGU-------UUUUAUGUua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 15322 0.67 0.999003
Target:  5'- -gCCGCgGGCGUAGcgggggcgggcgggGGGUGCGugAUGGCu -3'
miRNA:   3'- ggGGCGaCCGCGUU--------------UUUAUGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 15540 0.66 0.99976
Target:  5'- -gCUGCUGGCGCc--GGUGCGcgcGCg -3'
miRNA:   3'- ggGGCGACCGCGuuuUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 15637 0.74 0.92063
Target:  5'- cCCCCG-UGGCGCAuGAAc-CAGUAGUc -3'
miRNA:   3'- -GGGGCgACCGCGUuUUUauGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 16173 0.67 0.9983
Target:  5'- gCCCCGUUGGcCGCGGaccccGAAU-CGGaacUGGCc -3'
miRNA:   3'- -GGGGCGACC-GCGUU-----UUUAuGUU---AUCG- -5'
6487 3' -47.4 NC_001847.1 + 16314 0.71 0.980939
Target:  5'- aCCCGC-GGCGCGGGuGUAgGcaAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUUuUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 16467 0.66 0.999612
Target:  5'- gCCCGC-GGCGCAGAGcgcggACAccucucuuGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUUua---UGUuau-----CG- -5'
6487 3' -47.4 NC_001847.1 + 16704 0.66 0.999389
Target:  5'- gCCgGCaGGCGCAGacGAGcACGAUcaccAGCg -3'
miRNA:   3'- gGGgCGaCCGCGUU--UUUaUGUUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 16921 0.68 0.996461
Target:  5'- -gCCGCUcGGCGCAGAcgccggucugcucAGUGCGcgacggGGCg -3'
miRNA:   3'- ggGGCGA-CCGCGUUU-------------UUAUGUua----UCG- -5'
6487 3' -47.4 NC_001847.1 + 17129 0.68 0.997452
Target:  5'- uUCCGCUGGCGCucccg-GCuucguccucgAGCa -3'
miRNA:   3'- gGGGCGACCGCGuuuuuaUGuua-------UCG- -5'
6487 3' -47.4 NC_001847.1 + 17458 0.68 0.997987
Target:  5'- gUCCCGCggucguacaggccggGGCGCA---GUAC--UAGCg -3'
miRNA:   3'- -GGGGCGa--------------CCGCGUuuuUAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 18120 0.66 0.999511
Target:  5'- cCCCCGCcGG-GCAG----ACAggAGCg -3'
miRNA:   3'- -GGGGCGaCCgCGUUuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 18244 0.67 0.9983
Target:  5'- gCUCGCgUGGCGCuuGAAguUGCGGgucAGCc -3'
miRNA:   3'- gGGGCG-ACCGCGuuUUU--AUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 18836 0.75 0.901444
Target:  5'- aCCaCGUUGGCGUGguccAAGGUucGCAGUAGCa -3'
miRNA:   3'- gGG-GCGACCGCGU----UUUUA--UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 19147 0.72 0.953794
Target:  5'- cCCCCGgaGGCGCuuuuuuuuuugucccCGAUGGCa -3'
miRNA:   3'- -GGGGCgaCCGCGuuuuuau--------GUUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.