miRNA display CGI


Results 1 - 20 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 14049 0.66 0.99976
Target:  5'- aCCgUCGC-GGCGCAGAGcgcaaGCAGcAGCa -3'
miRNA:   3'- -GG-GGCGaCCGCGUUUUua---UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 76248 0.66 0.999612
Target:  5'- gCCCGC-GGCGCAuuugccGUGCuugccgcAGCa -3'
miRNA:   3'- gGGGCGaCCGCGUuuu---UAUGuua----UCG- -5'
6487 3' -47.4 NC_001847.1 + 93556 0.66 0.999612
Target:  5'- gCCaCGCUGGCcucgacGCAAA---GCAcgGGCc -3'
miRNA:   3'- gGG-GCGACCG------CGUUUuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 24273 1.16 0.006948
Target:  5'- cCCCCGCUGGCGCAAAAAUACAAUAGCu -3'
miRNA:   3'- -GGGGCGACCGCGUUUUUAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 82304 0.66 0.99976
Target:  5'- -aCCGg-GGCGgGAGAAUGCG--GGCg -3'
miRNA:   3'- ggGGCgaCCGCgUUUUUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 78295 0.66 0.99976
Target:  5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3'
miRNA:   3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 69959 0.66 0.99976
Target:  5'- gUCCGCgGGCGCGAccAUAaacucCAGaGGCa -3'
miRNA:   3'- gGGGCGaCCGCGUUuuUAU-----GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 54940 0.66 0.99976
Target:  5'- gCCCUGCgcuucgcGGCGCAcccgcccGCAGaGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 70574 0.66 0.999694
Target:  5'- gCCCCGC-GGCcCGAGGcaGCgGAUGGUg -3'
miRNA:   3'- -GGGGCGaCCGcGUUUUuaUG-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 35589 0.66 0.999612
Target:  5'- --gCGCcGGCGCAAGGcUGCGGUAcaucGCa -3'
miRNA:   3'- gggGCGaCCGCGUUUUuAUGUUAU----CG- -5'
6487 3' -47.4 NC_001847.1 + 124136 0.66 0.999694
Target:  5'- gCCCUGCgccUGGCucuGCuGGGAGUGCAGgcGCc -3'
miRNA:   3'- -GGGGCG---ACCG---CG-UUUUUAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 51228 0.66 0.999722
Target:  5'- gCCCUGCUcgcgGGCGCGccgcugccggccgauGAAAgugACGAgauGCa -3'
miRNA:   3'- -GGGGCGA----CCGCGU---------------UUUUa--UGUUau-CG- -5'
6487 3' -47.4 NC_001847.1 + 118470 0.66 0.99976
Target:  5'- gCCUGC-GGCGCAAG---GCccgGGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 14112 0.66 0.999694
Target:  5'- gCCaGUUGGCGCcGGAA-GCGAgcgGGCg -3'
miRNA:   3'- gGGgCGACCGCGuUUUUaUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 104000 0.66 0.99976
Target:  5'- gCCCGCgaaGGCcagccGCAGAA--ACGAcAGCg -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 36183 0.66 0.99976
Target:  5'- aCCCCuacGCcgUGGCGCGugggcucgcugAAGAUAUAA-GGCg -3'
miRNA:   3'- -GGGG---CG--ACCGCGU-----------UUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31365 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 57580 0.66 0.999612
Target:  5'- gCCCGCgcGGCcGCGGAAAgcgcACGAgGGUg -3'
miRNA:   3'- gGGGCGa-CCG-CGUUUUUa---UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 103277 0.66 0.99976
Target:  5'- gCUCCGCcGGCaGCAAcgccgGCGAgcccgGGCg -3'
miRNA:   3'- -GGGGCGaCCG-CGUUuuua-UGUUa----UCG- -5'
6487 3' -47.4 NC_001847.1 + 121967 0.66 0.99976
Target:  5'- gUCCGgUGGCGUGAAc-UGC-GUGGCu -3'
miRNA:   3'- gGGGCgACCGCGUUUuuAUGuUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.