Results 1 - 20 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6487 | 5' | -50.9 | NC_001847.1 | + | 119826 | 0.66 | 0.993261 |
Target: 5'- gCCGCgauCAUguacGGGUcgcgcacGCCCGCGCGc -3' miRNA: 3'- -GGCG---GUAa---CCUAaaaaa--CGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 134842 | 0.66 | 0.993261 |
Target: 5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3' miRNA: 3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 75263 | 0.66 | 0.993261 |
Target: 5'- cUCGCCAacgcGGAg-----GCCgCGCGCGc -3' miRNA: 3'- -GGCGGUaa--CCUaaaaaaCGG-GCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 131976 | 0.66 | 0.993261 |
Target: 5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3' miRNA: 3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 61122 | 0.66 | 0.993261 |
Target: 5'- uCCGCCAgcGGcacgc--GCCgGCGCa -3' miRNA: 3'- -GGCGGUaaCCuaaaaaaCGGgCGCGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 99445 | 0.66 | 0.993261 |
Target: 5'- gCGCCAgcgUGGGag--UUGCgCaGCGCGc -3' miRNA: 3'- gGCGGUa--ACCUaaaaAACGgG-CGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 89122 | 0.66 | 0.993261 |
Target: 5'- gCCGCCccggUGGucg---UGCgCGCGCu -3' miRNA: 3'- -GGCGGua--ACCuaaaaaACGgGCGCGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 29163 | 0.66 | 0.993261 |
Target: 5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3' miRNA: 3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 104828 | 0.66 | 0.993261 |
Target: 5'- gCCGCCGggGGGgcgggcGUCCGCaGCu -3' miRNA: 3'- -GGCGGUaaCCUaaaaaaCGGGCG-CGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 32029 | 0.66 | 0.993261 |
Target: 5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3' miRNA: 3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 54304 | 0.66 | 0.992964 |
Target: 5'- gCCGCCGcccGGAUc---UGCCCccccaagucgcggcGCGCGg -3' miRNA: 3'- -GGCGGUaa-CCUAaaaaACGGG--------------CGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 101107 | 0.66 | 0.992964 |
Target: 5'- gCGCCGcgGGGcccaucgccugGCCCaGCGCGg -3' miRNA: 3'- gGCGGUaaCCUaaaaaa-----CGGG-CGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 6611 | 0.66 | 0.992862 |
Target: 5'- aCCGCUGUUGGAguaaagccGCCgGUagGCGg -3' miRNA: 3'- -GGCGGUAACCUaaaaaa--CGGgCG--CGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 65453 | 0.66 | 0.992656 |
Target: 5'- cCCGCCcgUGuaggcgg-GCgCGCGCGg -3' miRNA: 3'- -GGCGGuaACcuaaaaaaCGgGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 18009 | 0.66 | 0.992551 |
Target: 5'- gCGCgAagugUGGAUgccaaacuugccggUGCCCGCGCc -3' miRNA: 3'- gGCGgUa---ACCUAaaaa----------ACGGGCGCGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 8626 | 0.66 | 0.992229 |
Target: 5'- cCCGCCGggGGAgc----GgCCGCuGCGg -3' miRNA: 3'- -GGCGGUaaCCUaaaaaaCgGGCG-CGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 103337 | 0.66 | 0.992229 |
Target: 5'- uCCGCgGagGGcaag--UGCCCGaCGCGg -3' miRNA: 3'- -GGCGgUaaCCuaaaaaACGGGC-GCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 113541 | 0.66 | 0.992229 |
Target: 5'- gCCGCCAgcgaguuuagGGGggcgggGCCC-CGCGg -3' miRNA: 3'- -GGCGGUaa--------CCUaaaaaaCGGGcGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 32016 | 0.66 | 0.992229 |
Target: 5'- gCGCCGgcGGcccgc--GCUCGCGCGg -3' miRNA: 3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 15712 | 0.66 | 0.992229 |
Target: 5'- cCCGCCGUcGGcgUcuaUGCCUcgauGCGCa -3' miRNA: 3'- -GGCGGUAaCCuaAaaaACGGG----CGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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